Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01818 ATGGATTTTCATGGCAAGGACACCCTCCTCAGCCTAATGGACACCGAAAAGTCAGAACCACCACAATCCCCTCTTCACCTTCATCTCCAATCCCACAGAGAGATAAGCGAACAAGACCTTCAGTTCAGTTCCCCAAGGCCTTCAAGCTCCGATGGCATGTTCCCTATCATGCCGGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCATCTTCTTTGCTTTACCACTGCATCGCTTCGCTCCACCGCCACGAAGGTAACATCTACGCAATCGCTGCTTCAAAGGGTTTGGTATTCACCGGCTCCAACAGCAGCAGAATCCGTGTCTGGAAGCAGCCAGATTGCATGGACAGAGGGTATCTCAAAGCCAGCTCCGGTGAGGTGAGAGCCATTCTCGCTTATAGCAACATGCTTTTCTCCACGCACAAGGACCACAAGATAAGGATATGGACCTTCACCGTTTCAGATAACTTCAAGTCCAAGAAACTAGGCACTCTCCCTAGAAAGAGCTCGATTCTCATGTTCCCCTCGAGAGGGAAGAACACGCCCAAGCACAAAGATTCCGTCTCTTGCATGGCGTATTACCACTCCGAGGGCCTCCTTTACACCGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCCGACAGAAAATGCGTCGACTCGTTCGGCGCACACGAGGATAACGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGATCCTCCGACGGGTCGGTGAAGATATGGAGAAGGGTTTACACTGAAGACTCGCACACTCTCACCATGACTCTCAAATTCCAACCCTCCCCCGTCAACGCTCTGGCGTTGAGTTGCTCGTTCAACCACTGCTTCCTCTATTCGGGGTCCTCCGATGGGATGATAAACTTCTGGGAGAAGGAACGGTTGTGCTACAGGTTCAACCATGGAGGGTTCTTACAGGGTCACCGATTTGCGGTTCTTTGTTTAGCGACGGTAGGGAACATGATATTCAGTGGGTCAGAGGACACCACCATTAGGGTATGGAGGAGAGAGGAAGGGAGTTGCTACCATGAGTGTTTGACGGTTTTGGATGGACACAGAGGACCGGTGAGATGCTTGGCTGCATGCCTGGAGATGGAAAAGGTTGTGATGGGATTCTTGGTGTACAGTGCTAGTTTGGATCAAACATTCAAAGTTTGGAGGATTAAAGTTTTGCCCGATGAAAAAATGTGCATGGACTACAGTGAGCAGTGTGAAGCCCCAAGGGTGAAGATCAGGGACTACGATATGAGCCCGGTTCTGTCGCCTTCTTGGGTGGAGAAGAAGCTTCAAGGTAGCTATTTCCAGTAG 1350 0.5081 MDFHGKDTLLSLMDTEKSEPPQSPLHLHLQSHREISEQDLQFSSPRPSSSDGMFPIMPDSPWTLSPLPTPSSSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDNFKSKKLGTLPRKSSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFGAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSEQCEAPRVKIRDYDMSPVLSPSWVEKKLQGSYFQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01818 449 Pfam WD domain, G-beta repeat 358 400 IPR001680 GO:0005515
Vian4g01818 449 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Vian4g01818 449 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Vian4g01818 449 Pfam WD domain, G-beta repeat 318 348 IPR001680 GO:0005515
Vian4g01818 449 Pfam WD domain, G-beta repeat 186 214 IPR001680 GO:0005515
Vian4g01818 449 SUPERFAMILY WD40 repeat-like 77 403 IPR036322 GO:0005515
Vian4g01818 449 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vian4g01818 449 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Vian4g01818 449 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vian4g01818 449 CDD WD40 78 401 - -
Vian4g01818 449 SMART WD40_4 312 349 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 115 152 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 218 257 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 177 215 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 75 112 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 264 305 IPR001680 GO:0005515
Vian4g01818 449 SMART WD40_4 356 401 IPR001680 GO:0005515
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 358 IPR001680 GO:0005515
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Vian4g01818 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Vian4g01818 449 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 44 404 IPR045182 -
Vian4g01818 449 Gene3D - 62 173 IPR015943 GO:0005515
Vian4g01818 449 Gene3D - 178 426 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01818 Vian-Chr4 34488860 34490209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01818 186 405 Miscellaneous Gene Families AT5G08390 23.789 1.33e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01818 - - gsj:114414206 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01818 4 34488860 34490209 Vian4g01818 4 34488860 34490209 ECH