Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01816 ATGGAAACGCATATGGCAGCTTCCTTCGCCACTCTCCCTCCTTATTGCTCCATTCAGAAGAGACCCTTTACCTTCCCACACCATCTCATTACTTCGGGACTTTCCTCAAACACTAAGCTCGTCTTAAGAGCCCTACCTCATATTTCGCTTCAAAATCATGTTTCCCAAGCCATCACAGACATTAAAACCAAATTTCTTAACGCTGTCGTGGATTCAGCCTTTGAGTTTGTCGACCAGCTTGTGCTTCCATCTCAGACAAACTTTGCTCCAGTGGAAGAATTAGGGGAAGCCATGGATATCAGTGACATTGAAGGCCACATACCAGATCATTTTCCGGAAGGTGTCTACATTAGAAATGGACCAAACCCACTGTTTGGAGGGTTGAAATCATCCAAGTCTCTGTTGGGGAGGACAAAGAGTGTTTGGGTGGAAGGAGAAGGAATGCTTCATGCTTTGTATTTCAAAAGGAAAAATGACGGCTGCTACACCATATTCTACAACAACAGATACGTTCAAACTGTAACATACAACCTTGAGAAACAAAGTACCAACCCTTTGTTTCTCCCTGCAGTAAAAGGAGATTCATTGGCCGTTATGTGTTCCATGCTTCTAAACTGGCTGAGATTCGGAAAACTGAATAAAGATTACAGTAACACCAATGTGATTGAGCATTCAAACAAGTTTTACTCGGTTTCGGAGAATCACATCCCACAAGAGTTTGACATCTTCACACTAAATACTTTAAAATACTGGGATCTCAATGGCGCATGGAATCGTCCCTTTGCAAGTCACCCCAAGAAAGTTCTGGGTACTGGAGAACTAGTTATTTTTGGTGTAGATGCAACTAAACCTTATCTTGAAATTGGAATAGTATCGGCTGAAGGAAACGAGCTGGTTCACAAAGCAGATATAAAACTAGAGAGAAGCAGTTTATGCCATGACATAGGTATCACAAGCAGGTATATAGCGATATTGGATTTTCCACTGATAGTTGATTCAAACAGACTACTTAGAAGAGGCCAATTAATCAAATTCGACAAGGAGAAATATGCGAGGATTGGGATAATGCCGCTCTATGGTGATGCTAACTCAATCAAGTGGTTTGAGGTGGAACCTAATTGCACATTTCATCTCATCAATTCCTTTGAGGATGGTCATGAGGTTGTGTTGTGGGGTTGTAGAGCACTAGATTCAATAATTCCAGGACCTGAAGATGGTTTGAAGGAATCTAAGTTATTCTCTCGGTGTTATGAATGGAGATTAAACATGAAAACTGGAGAGGTTAAGGAAAAATATCTAACCGGACCAGAACAATATATGGATTTTCCAATGATCAATGCAAGTTTTACAGGAATTAAGAACAGATACGCATACACCCAAGTGGTTGATCCCACTGCAAGTTTTGCTGCAGATATTCCCAAATACGGAGCTTTAGCAAAGCTATACTTTGAAGAACCATGTTCAGAATTCCCTGTGGGAGAGGCACGACAAGATGAGCTTATAAGGGTGGAATATCATAGGTTTGAAAAAGATGTATTTTGCACTGGATCTGCGTTTGTCCCTAAGGAAGGTGGCGTTGAAGAAGATGATGGTTGGATGATCACTTTTGTTTACAATGAAGATATTGGCATATCTCAAGTTCATATAGTTGACACAAAGAAGTTTTCAGGAGAGGCAGTTGCCAAAATTACAATACCTTGCAGAGTTCCATATGGATTTCACGGAGCTTTCATGCCAATCTCATTTTAG 1749 0.4077 METHMAASFATLPPYCSIQKRPFTFPHHLITSGLSSNTKLVLRALPHISLQNHVSQAITDIKTKFLNAVVDSAFEFVDQLVLPSQTNFAPVEELGEAMDISDIEGHIPDHFPEGVYIRNGPNPLFGGLKSSKSLLGRTKSVWVEGEGMLHALYFKRKNDGCYTIFYNNRYVQTVTYNLEKQSTNPLFLPAVKGDSLAVMCSMLLNWLRFGKLNKDYSNTNVIEHSNKFYSVSENHIPQEFDIFTLNTLKYWDLNGAWNRPFASHPKKVLGTGELVIFGVDATKPYLEIGIVSAEGNELVHKADIKLERSSLCHDIGITSRYIAILDFPLIVDSNRLLRRGQLIKFDKEKYARIGIMPLYGDANSIKWFEVEPNCTFHLINSFEDGHEVVLWGCRALDSIIPGPEDGLKESKLFSRCYEWRLNMKTGEVKEKYLTGPEQYMDFPMINASFTGIKNRYAYTQVVDPTASFAADIPKYGALAKLYFEEPCSEFPVGEARQDELIRVEYHRFEKDVFCTGSAFVPKEGGVEEDDGWMITFVYNEDIGISQVHIVDTKKFSGEAVAKITIPCRVPYGFHGAFMPISF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01816 582 Pfam Retinal pigment epithelial membrane protein 90 579 IPR004294 GO:0016702
Vian4g01816 582 PANTHER BETA-CAROTENE DIOXYGENASE 90 578 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01816 Vian-Chr4 34467220 34473270 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01816 - - gmx:100817207 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01816 4 34467220 34473270 Vian4g01816 4 34467220 34473270 ECH