Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian4g01807 | ATGGAAGACGCCGGGAAACCTCTGAAGTCCGGCAACCCGTCGCGTAAGGTGGTTGATTTGGCTGCCGGAGAAGCACACAATCTCGTTCTTACTGGGGATGGCAGTGTCTACAGTTGGGGTAGGGGAATGTTTGGAAGGATTGGGAGTGGCTCAGAAACGGATGAGCTTTTTCCAGTACAACTCAAATTTGGAAACGCAAATCCAAATGGAACACAAGACACTGTCAAGGTCGTGGGAATTGCTGCTGGCGCTTATCATAGTCTCGCTCTTGCAGAAGATGGAGCTGTTTGGTCTTGGGGTTACAATTTCTATGGTCAACTTGGTACAAATGGAGAGAAATCACATGACAATGAATATGAGGTTGGAGACCATTGTTTAGTTCCCCGGTTACTGAACAGGTTTGTTGAATTGCACTCTGTCAATTCTTCATCGGGTGTGTCTGAAACAGAAGCCAAAACATTACTTAAGATATGTGCTATCAAAGCTGGAGGAATGATATCTCTGGCTATTGATAACTGTGGGACCCTATGGGTGTGGGGAAACTGCCCACAACAAAGTAAAGAAGGTGAGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTCGGGATTTTCTGGGTCGATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATATCGTAGCTCTGGTTAGTGCTGGCGAATCATACAATGGTGAAGATCTAGTATGCTACTCTTGGGGTTATAACACCCGTGGCCAATTGGGCTTGGGGGACAGAGAGAACAGGCTGCATCCGGAAGTTGTTAAAACATTTGATGAGGAATCACCCTATGAGGTGGCATGTGGTGCCTATCACACTGCTTTGCTAACTCGTATAAAGAAAAGTAGTAGTGACACATTAGACAGCAGATGCTGGACCTTTGGCCTTGGAGATAATGGCCAGCTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTATCCCTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGCGTAGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGAGCTGGAACAGATTCTGGTGATGCACTGTCTCCCCGTCTTATGTCATGGAAGCCAAATCAACCTAAATTTCCAGATCCAGTTAAACTTGCATGTGGGGCCGCACATACTGTTATAATTGCGCAAGGGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGAAGTGGAGTTCTTGGAGATGGTAAAGGAGTAGATTGTTACACTCCCACGCTCGTACTATGGCCTCAAATGATGGATGACTCTGAGGAAGAGGAAGTAAAAAGCGATGGTGAGCAAGGTAAGGCTAGAGAAAAGGAGACTGAAGCAACAAATGAAGCAGAAGAGAAACTATCCTCAGCATTGAATGAGCTGAAGCTGCTTAAAACAAAGCTATCTGTGATTAAAAATTATGCCAGTATACTGCATGGTTCGGTTTTTGGAAAGCCCTTTGATGAGCAAGATATCCCTGATTCATTGCAGAATTCAGGTTCATTTGACATGGGAAAAGAATGGGAGAAGATGTTAGAGACCGCAGATCATAGGAAGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAAGAGAAGGATAAAGGAAATTGTAAAGGAGTGTCTCCAATCTTCAGAGGTGTAA | 1740 | 0.4454 | MEDAGKPLKSGNPSRKVVDLAAGEAHNLVLTGDGSVYSWGRGMFGRIGSGSETDELFPVQLKFGNANPNGTQDTVKVVGIAAGAYHSLALAEDGAVWSWGYNFYGQLGTNGEKSHDNEYEVGDHCLVPRLLNRFVELHSVNSSSGVSETEAKTLLKICAIKAGGMISLAIDNCGTLWVWGNCPQQSKEGELALVSSFTPTPVRDFLGRSVVKVACGNEHIVALVSAGESYNGEDLVCYSWGYNTRGQLGLGDRENRLHPEVVKTFDEESPYEVACGAYHTALLTRIKKSSSDTLDSRCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVSLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSWKPNQPKFPDPVKLACGAAHTVIIAQGGYRMWSWGRGRSGVLGDGKGVDCYTPTLVLWPQMMDDSEEEEVKSDGEQGKAREKETEATNEAEEKLSSALNELKLLKTKLSVIKNYASILHGSVFGKPFDEQDIPDSLQNSGSFDMGKEWEKMLETADHRKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEV | 579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 174 | 226 | IPR000408 | - | |
| Vian4g01807 | 579 | MobiDBLite | consensus disorder prediction | 454 | 472 | - | - | |
| Vian4g01807 | 579 | SUPERFAMILY | RCC1/BLIP-II | 156 | 443 | IPR009091 | - | |
| Vian4g01807 | 579 | Gene3D | - | 234 | 481 | IPR009091 | - | |
| Vian4g01807 | 579 | Gene3D | - | 3 | 233 | IPR009091 | - | |
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 34 | 93 | IPR000408 | - | |
| Vian4g01807 | 579 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 348 | 407 | IPR000408 | - | |
| Vian4g01807 | 579 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 297 | 344 | IPR000408 | - | |
| Vian4g01807 | 579 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 93 | 170 | IPR000408 | - | |
| Vian4g01807 | 579 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 33 | 90 | IPR000408 | - | |
| Vian4g01807 | 579 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 238 | 283 | IPR000408 | - | |
| Vian4g01807 | 579 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 213 | 223 | IPR000408 | - | |
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 410 | IPR000408 | - | |
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 286 | IPR000408 | - | |
| Vian4g01807 | 579 | PRINTS | Chromosome condensation regulator RCC1 signature | 407 | 428 | IPR000408 | - | |
| Vian4g01807 | 579 | PRINTS | Chromosome condensation regulator RCC1 signature | 96 | 112 | IPR000408 | - | |
| Vian4g01807 | 579 | PRINTS | Chromosome condensation regulator RCC1 signature | 35 | 51 | IPR000408 | - | |
| Vian4g01807 | 579 | PRINTS | Chromosome condensation regulator RCC1 signature | 338 | 356 | IPR000408 | - | |
| Vian4g01807 | 579 | PRINTS | Chromosome condensation regulator RCC1 signature | 213 | 229 | IPR000408 | - | |
| Vian4g01807 | 579 | MobiDBLite | consensus disorder prediction | 447 | 472 | - | - | |
| Vian4g01807 | 579 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 15 | 180 | - | - | |
| Vian4g01807 | 579 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 80 | 90 | IPR000408 | - | |
| Vian4g01807 | 579 | SUPERFAMILY | RCC1/BLIP-II | 13 | 181 | IPR009091 | - | |
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 94 | 173 | IPR000408 | - | |
| Vian4g01807 | 579 | Coils | Coil | 463 | 490 | - | - | |
| Vian4g01807 | 579 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 273 | 283 | IPR000408 | - | |
| Vian4g01807 | 579 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 296 | 348 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian4g01807 | Vian-Chr4 | 34356192 | 34359147 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian4g01807 | - | - | gmx:100815199 | 985.711 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian4g01807 | 4 | 34356192 | 34359147 | Vian4g01807 | 4 | 34356192 | 34359147 | ECH |