Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01789 ATGGATGACGATGAGAGAGAGAGGTTACTGGAGAGGGAGAGATTGCAAATCCAGATGATTCGCCAGCTCGATCTCGAGCACCTTGAAGTTGAAGAAGTCGATTACTCCGATGAAGACGAAGACGCCGACACCGAGGTCGACCAGGATTATGCGATTTGGCTTTCACAATTAACTTCGTCCGGTTCTCCTCACTCTTCTGCTGAATTCACTTTCGACACCTATATCACGCCGTTGCATACCTATCTCGGAGATGTCGAAGACACGCGTCACAGGACTGCGTTTTTGGACGGTGGAGCTGTATTGAACATTCCGCTCTTTTGTCTCCGAGGAGTCGTACTCTTTCCTGGGGCTACACTTCCCCTTAGAGTTATTGAACCTCGTTTGGTGGCTGCTGTGGAGAGAGCTCTAACTCAAGATGATGTTCCTCATACCATTGCTGTGATTCGAATCCACAGGGATACTGCAACACGTAGGACGAAATCAGCAAGCGTTGGGACAACTGCAGAGATTCGACAATTTGGGCGTCTGGGGGACGGTTCGCTGAATGTAGTTACCCGTGGACAACAACGATTTCGCCTAAGACGGTCCTGGAATGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGATCTTCCAGTGAGAATTCCAAGAGATGCTTTTGGCAAATTAGCACCATTGAGTAACATGCCCTGTAGTCAAGCTGTCTCACATACGGTGTCTTCACCATATTCTCATGTTAAAATGCAAAGGTCAAAAGATAAGGAAAGTGATTCAGAACCAAATTCAGATGACAGTTTTGAGAATGAACTCTCACCGGTGGAAAGGAAAATCCATCTATCAGTTGTTGGCTCCAGTTACGTAGATGATACAATGGATGAATCAGCAAACAGCTGCAAACCTAAATTCATGTGTAAGTCAGATCAGGAAATTAGATCCAATCTGGATTCAAGGACTGGGAATTGTTCCACTTCTGGAAAGCAGTCATGGAATGAAGAGCTTAATAGATGTAAAAACATATGTGCCTACACATCTCATAAAATTTCAAAAGCATTTTGGCCCCACTGGACATATCGGATGTTTGACTCTTATTTGCTGGCACAAAGGGCTGCAGATATGTGGAAGCGAATAGTTGGGGTGCCTAACATGGAAAGTCTCGTTAAGAAGCCTGATGTTTTATCATTTCACATAGCTAGTAAAATACCTGTGTCTGAGTCTACAAGGCAGGAGCTTTTGGATATAGATGGCATTGCATACAGATTGCGTAGGGAAATTGAATTACTAGAGAGCATTGATCTTATCCGGTGTAAAAGCTGTGAGACTACGATTGCAAAACGAAGTGATATGTTGGTGATGTCGAGTGAGGGTCCTCTTAGTGCTTATGTGAATCCAGGTGGTTATGTGCATGAGATAATGACTCTTTACAAGGCAAATGGTTTATCTCTTCTTGGACCAGCAGTAGCTGAATACAGTTGGTTTCCTGGGTATGCATGGACAATTGCTATTTGTGCTACATGTAAAACCCAAATGGGGTGGCTTTTCACGGCCAGGAGCCAAAAACTAAAACCCAGCACTTTCTGGGGAATTCGGAGCTGTCAACTTGCAGAAGAAAAAACGCGAAAACCCATAGTTTGA 1644 0.4422 MDDDERERLLERERLQIQMIRQLDLEHLEVEEVDYSDEDEDADTEVDQDYAIWLSQLTSSGSPHSSAEFTFDTYITPLHTYLGDVEDTRHRTAFLDGGAVLNIPLFCLRGVVLFPGATLPLRVIEPRLVAAVERALTQDDVPHTIAVIRIHRDTATRRTKSASVGTTAEIRQFGRLGDGSLNVVTRGQQRFRLRRSWNDVEGVPYGEIQIIEEDLPVRIPRDAFGKLAPLSNMPCSQAVSHTVSSPYSHVKMQRSKDKESDSEPNSDDSFENELSPVERKIHLSVVGSSYVDDTMDESANSCKPKFMCKSDQEIRSNLDSRTGNCSTSGKQSWNEELNRCKNICAYTSHKISKAFWPHWTYRMFDSYLLAQRAADMWKRIVGVPNMESLVKKPDVLSFHIASKIPVSESTRQELLDIDGIAYRLRREIELLESIDLIRCKSCETTIAKRSDMLVMSSEGPLSAYVNPGGYVHEIMTLYKANGLSLLGPAVAEYSWFPGYAWTIAICATCKTQMGWLFTARSQKLKPSTFWGIRSCQLAEEKTRKPIV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01789 547 Pfam ATP-dependent protease La (LON) substrate-binding domain 102 432 IPR003111 -
Vian4g01789 547 ProSiteProfiles CULT domain profile. 434 541 IPR034750 -
Vian4g01789 547 ProSiteProfiles Lon N-terminal domain profile. 103 433 IPR003111 -
Vian4g01789 547 FunFam ATP-dependent protease La domain-containing protein 83 211 - -
Vian4g01789 547 PANTHER CEREBLON 45 535 - -
Vian4g01789 547 SMART lon_5 102 433 IPR003111 -
Vian4g01789 547 MobiDBLite consensus disorder prediction 240 273 - -
Vian4g01789 547 FunFam Lon protease homolog 365 429 - -
Vian4g01789 547 CDD CRBN_C_like 437 533 IPR034750 -
Vian4g01789 547 Gene3D Peptide methionine sulfoxide reductase. 430 546 - -
Vian4g01789 547 Gene3D - 83 211 IPR046336 -
Vian4g01789 547 SUPERFAMILY PUA domain-like 102 432 IPR015947 -
Vian4g01789 547 Gene3D - 365 429 - -
Vian4g01789 547 MobiDBLite consensus disorder prediction 251 265 - -
Vian4g01789 547 FunFam Blast:Protein cereblon homolog 430 545 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01789 K11793 - gmx:100779918 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01789 4 34159216 34164151 Vian4g01789 4 34159216 34164151 ECH