Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01788 ATGTCAATACCACGCGTTCCTTCTGTTGCCGCCATCGCCACTGCCTCCTCCAACCCTCCCGATCAAATCATGCACTCCATGAAACCGCCCTTGGCCGCCCCGAAGACTGCTACCGCTTCGCCCCTGACCACTGCCTCGACCCCGAAGCAGACATGGTCAAGACTTCTGTCGATAAAGCTAAACGGTAAGGCGTGCGTGGAGTGGAAGAAGATGAGCGTTTCGCATTTCGCTGTTCTATCGTGTCCCGTGCTTCAACGCTCCGTTCTCGCATATGCTGTTGTACTACTCTCACTGCTACCTCCACAGAGACTCCAACTCCAACCACCGAAACGAGTAGTGTCGGGGGTTCAGCCCACGGGCTCAATTCACCTTGGAAACTATTTTGGAGCAATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGAAACACTTTTCTTCATTGTGGACCTGCACGCGATTACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCCAAGGCCTCAGTATTTGTACAGTCTCATGTTCGCTCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCGATTGGTTGGCTGAACAAGATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTGGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCGAGACTTAGCTGAGCGGGTTAATAATTTATATGGAGGGAGAAAGTGGAAGAAATTAGGGGGCCGAGGTGGTACTATATTTAAGGCAAGTTTTTTACTTTTTCCGTTTTACCATCAAAGAGTATATATGTTGTCATTGAGCTTAACTTCCTTCACCAGGTCTGAACCGAGCTTAATGATAAAGATAAATGGAGGAGATCCACAGCATTATCAACTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTGTTTCAGGAAAGGCGAAAGAGGAAGTTGTTCTGGAATGCCAAAATATGAACTGGGGAACTTTCAAAACCCTTTTGACAGATGCCTTGATTGATCACTTACATCCCATTCAGGTTCGCTATGAGGAATTCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCACAAGGTGCTAGAAATGCAGCAGAAATAGCAGATGCCACACTTGATAATGTTTATCAAGCAATGGGATTTTTGAGGAGAAAGTGA 1362 0.4464 MSIPRVPSVAAIATASSNPPDQIMHSMKPPLAAPKTATASPLTTASTPKQTWSRLLSIKLNGKACVEWKKMSVSHFAVLSCPVLQRSVLAYAVVLLSLLPPQRLQLQPPKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRSHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKASFLLFPFYHQRVYMLSLSLTSFTRSEPSLMIKINGGDPQHYQLIANKIKRCKTDSFPSLEFDNSERPECNNLLSIYQLVSGKAKEEVVLECQNMNWGTFKTLLTDALIDHLHPIQVRYEEFMSDSGYLDEVLAQGARNAAEIADATLDNVYQAMGFLRRK 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01788 453 SUPERFAMILY Nucleotidylyl transferase 109 449 - -
Vian4g01788 453 Pfam tRNA synthetases class I (W and Y) 109 404 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vian4g01788 453 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 106 450 - -
Vian4g01788 453 Hamap Tryptophan--tRNA ligase [trpS]. 109 450 IPR024109 GO:0004830
Vian4g01788 453 CDD TrpRS_core 111 401 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vian4g01788 453 PRINTS Tryptophanyl-tRNA synthetase signature 122 138 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vian4g01788 453 PRINTS Tryptophanyl-tRNA synthetase signature 172 191 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vian4g01788 453 PRINTS Tryptophanyl-tRNA synthetase signature 249 270 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vian4g01788 453 MobiDBLite consensus disorder prediction 17 45 - -
Vian4g01788 453 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 118 127 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vian4g01788 453 Gene3D HUPs 112 448 IPR014729 -
Vian4g01788 453 Gene3D - 307 419 - -
Vian4g01788 453 NCBIfam tryptophan--tRNA ligase 109 449 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01788 K01867 - gmx:100780314 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01788 4 34138984 34150697 Vian4g01788 4 34138984 34150697 ECH