Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01783 ATGGCGGTTTCCGATAGTCCAAGCGGTGCCTCCACGCCGCCTCAACAGGAACAAGCCAACAAGTACGGTTTCACGAAGCCTCTATCTCTCGCGGGTCCCACCGACGCTGATCTCCACCGTAACAACGAATTGGAGAGGTTCTTGCTCGATTCGGGGCTTTACGAGAGCAATGATGAGTCCGCCGCGAGGAAGGAGGTTCTTCACCGCCTCGATCAGGTTCATGGACCTGGAGTTGACATTGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCTGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTGGATATCTCTCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCCCGGTTCTTCAGGGTCTATACACAGTGGCGATGGCCAAACCCTGTAATGCTATGCTCTATTGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAATCCCCGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGTTACAATGTCTCAGCAAGTACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATATCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAGTTGCATCGGACACTGATGATTTACTAGCATGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTTAAGATAGAGCGAGATACAAATGGTATGCTGCAGTGCCATCCTTATCCACATGAGTATATAGACACATCGAAGCCATGTGCTCATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAAGGACAGCAATTTGATATACGTGGAACGGTTGATGAATTTAGACAAGAAATAAATATGTATATCTACTGGAAGCCTGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTTCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCAAGACACATAAGCCATCCGACCGAAAAAACAGGTGATGATGCCACGAAGTGCTACTCTGGATCTGGGCCATCTGAAAGATGCACCAAGAGGAAAAGTTACCCTGAAATGGTGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAAAGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAGCTCAAATGAGTATTGATAGTATGGAAGGGGTTTGGGTAGCTGGTTCAACAACCAATTATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTGCTCCCAGGAAGTGGACTAAGCTCTGTCGTAGCTGACATGCAGATAAGTGAACCGGGCTTTGTTGACACCACACATGATATGTTGAAACCGAGGTGTGTAGAAGTTCCTAATGAGAATGGAGTTGTCGATGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTTGGAAAGTGAAGAAACCGAATCTACTAACAATTTTTCGAACTGTAAAGCGGGTGTCGTCGATATGGATCAGCAACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAGTTGCGAGGTGGACGAGTTTGGACTGAATCCCATGATGTTTGAGAGGGTTAATGGCTGA 2022 0.4367 MAVSDSPSGASTPPQQEQANKYGFTKPLSLAGPTDADLHRNNELERFLLDSGLYESNDESAARKEVLHRLDQVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYIFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHISHPTEKTGDDATKCYSGSGPSERCTKRKSYPEMVEKKPDKPDKRASISPQRLESVSPESCTSKSGGTAQMSIDSMEGVWVAGSTTNYANSNCEIKSSDVLPGSGLSSVVADMQISEPGFVDTTHDMLKPRCVEVPNENGVVDGDKAQDLALDCLESEETESTNNFSNCKAGVVDMDQQLDKACNFITRDECSDYVPNASSQNLSCEVDEFGLNPMMFERVNG 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01783 673 MobiDBLite consensus disorder prediction 500 519 - -
Vian4g01783 673 MobiDBLite consensus disorder prediction 445 460 - -
Vian4g01783 673 Gene3D - 152 310 - -
Vian4g01783 673 MobiDBLite consensus disorder prediction 445 519 - -
Vian4g01783 673 Pfam Poly(A) polymerase central domain 23 185 IPR007012 GO:0043631|GO:1990817
Vian4g01783 673 CDD NT_PAP_TUTase 73 181 - -
Vian4g01783 673 MobiDBLite consensus disorder prediction 476 498 - -
Vian4g01783 673 MobiDBLite consensus disorder prediction 1 27 - -
Vian4g01783 673 Gene3D Poly(A) polymerase predicted RNA binding domain 313 428 - -
Vian4g01783 673 Pfam Poly(A) polymerase central domain 186 309 IPR007012 GO:0043631|GO:1990817
Vian4g01783 673 Pfam Poly(A) polymerase predicted RNA binding domain 376 445 IPR007010 GO:0003723|GO:0043631
Vian4g01783 673 Pfam Poly(A) polymerase predicted RNA binding domain 313 370 IPR007010 GO:0003723|GO:0043631
Vian4g01783 673 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 313 439 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vian4g01783 673 FunFam Putative poly(A) polymerase gamma 183 308 - -
Vian4g01783 673 SUPERFAMILY Nucleotidyltransferase 20 180 IPR043519 -
Vian4g01783 673 MobiDBLite consensus disorder prediction 1 23 - -
Vian4g01783 673 PANTHER POLY A POLYMERASE 73 494 - -
Vian4g01783 673 FunFam Nuclear poly(A) polymerase 4 312 428 - -
Vian4g01783 673 SUPERFAMILY PAP/OAS1 substrate-binding domain 186 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01783 Vian-Chr4 34098582 34103769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01783 K14376 - gmx:100802620 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01783 4 34098582 34103769 Vian4g01783 4 34098582 34103769 ECH