Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01753 ATGGCACTTTCATCCACATTCTCGGCTGCAAAATTTGATGTTTTGTACCTCAAATCCTCATCTTCCTCTTCCTCGCAATTTCCTTCAAAGGCATTACCCACTGCTTTTCTTGGCCATAACAGAACGACCTTCGTCCGGAGAGGGGTTGTTCGCTGCGACTCTAAGCTCTCTGATGCATCCGTTGGTCCCAACAATGCTATCTCTCTCTCCGCTCTTGAGCAGCTCAAGACTTCTGCTGCTGATAGGTATACAAAGGAAAGGAGCAGCATTATTGTCATTGGGCTAAGTGTGCACACGGCACCCGTGGAAATGCGTGAAAAACTTGCAATTCCAGAAGCGGAATGGCCTAGAGCTATTGCAGAGCTGTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTCAGCACCTGCAACCGAATGGAGATATATGTTCTGGCACTGTCCCAACATCGTGGTGTCAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCTGTCCCTGTTTCAGAGCTAAGCCAGCACCGATTTTTACTTTACAACAATGATGCCACACAACATCTTTTTGAAGTATCAGCAGGTCTTGATTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCCCAAGTAAAGCAAGTTGTCAAGGTTGGACAAGGAGTTAACGGCTTTGGGAGAAACATCAGTGGGCTATTCAAGCATGCAATTACTGTTGGTAAAAGGGTTAGAACTGAGACTAACATTGCTTCCGGAGCAGTTTCTGTGAGCTCAGCTGCTGTGGAGTTGGCCTTTATGAAGCTACCTGAAGCCTCACTTGACAATGCCAGAATGTTGGTTATTGGAGCTGGGAAGATGGGGAAGCTCGTGATCAAACATTTGGTGGCTAAAGGTTGCAAAAAGATGGTTGTTGTCAATAGAACCGAGGAGAGAGTTGCTGCAATACGAGAAGAACTGAAGGATATTGAAATAATCTACAAACCCCTTTCAGAAATGCTCACCTGTGCTGGTGAAGCTGATGTAGTTTTCACCAGTACTGCATCAGAAACCCCATTATTCTTGAAAAGTAATGTCAAAGATCTTCCTCCTGCAAGTCAAGATGTTGGAGGCCGTCGCATTTTCGTTGACATTTCTGTTCCCCGGAATGTGGGTTCATGTGTCTCAGACCTTGAGTATGTGCGAGTTTACAACGTTGATGACCTTAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGCCTAAGAAAAGCAATGGAAGCACAGACAATCATTGCTGAAGAATCTAAGCAATTTGAAGCTTGGAGGGACTCGCTGGAAACTGTCCCTACTATAAAAAAATTGAGGGCTTATGCAGAAAGAATCAGGCTTGCTGAGCTGGAGAAATGCTTAGGTAAGATGGGTGATGATATACCAAAAAAAACACGGAGGGCTGTGGATGATCTTAGTCGGGGTATAGTGAATAAGTTGCTTCATGGTCCAATGCAACATTTAAGGTGCGATGGGAATGACAGTCGGACTCTTAGTGAGACACTCGAGAACATGCATGCTTTGAATAGGATGTTCAACCTTGATACTGAGATATCTGTTTTGGAGCAAAAGATTCGAGCGAAGGTAGAACAAAACCAGAAATGA 1617 0.4422 MALSSTFSAAKFDVLYLKSSSSSSSQFPSKALPTAFLGHNRTTFVRRGVVRCDSKLSDASVGPNNAISLSALEQLKTSAADRYTKERSSIIVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVMEWMSKTSSVPVSELSQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAFMKLPEASLDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEADVVFTSTASETPLFLKSNVKDLPPASQDVGGRRIFVDISVPRNVGSCVSDLEYVRVYNVDDLKEVVAANKEDRLRKAMEAQTIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMHALNRMFNLDTEISVLEQKIRAKVEQNQK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01753 538 FunFam Glutamyl-tRNA reductase 89 248 - -
Vian4g01753 538 NCBIfam glutamyl-tRNA reductase 90 499 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 412 518 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 248 408 IPR036291 -
Vian4g01753 538 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 93 243 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 ProSitePatterns Glutamyl-tRNA reductase signature. 186 209 IPR018214 GO:0008883
Vian4g01753 538 Hamap Glutamyl-tRNA reductase [hemA]. 89 516 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 4 535 - -
Vian4g01753 538 Gene3D - 249 401 - -
Vian4g01753 538 FunFam Glutamyl-tRNA reductase 248 407 - -
Vian4g01753 538 CDD NAD_bind_Glutamyl_tRNA_reduct 90 412 - -
Vian4g01753 538 Gene3D - 88 248 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 Coils Coil 301 321 - -
Vian4g01753 538 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 89 245 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vian4g01753 538 Pfam Shikimate / quinate 5-dehydrogenase 259 400 IPR006151 -
Vian4g01753 538 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 414 518 IPR015896 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01753 Vian-Chr4 33706648 33709218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01753 K02492 - gmx:100782247 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01753 4 33706648 33709218 Vian4g01753 4 33706648 33709218 ECH