Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01733 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTTTGGTGGTTTGTCTGGTGGTGCCGGTGATCGGCCTCGTAATTAGCCGTAGATGGCAGGTTTCGGAGGATAAGAAAGAGGAGATCAGGAGACTTTTGGTTTTGGCAGTGGAGGAAACTGCCAGGGCCGAGAAAGAAGCATACGGCACGGCTGTTACTGCTCCTCCAAGCAATCAATGCGCCGTGTGCTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCGGTTCGTTACTGTTCTTTTCAGTGCCAAACTGTTCATTGGCGGCAAGGTCACAAGTTAGAATGCAGTCCTTCCAGCACAAGCCACCGGAGTTATGATGTAACAAGTGATCTTGGCAGCAAGGTGGTAAAACAAGGCTACTCTGGAATATATGATGAGAAGTCAGAAAGTGAGAGAACAGAATGTAAATCATCTTTTGAAAAGTCTTCAATTTCTGATAGCTGCTTTTCTCCAAAAGTTTCATCTTGGAAGGATGAAAAACTCAGATTTGAGTCCCTTGCAGAGGGGAATATAACAGATTCTAATTGGGAATTGTCCAGTAATTCATTTTCTGGATTCTCAGCTTCCATAGGCTCCAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTGTCATTTCTAATGAGCATGACAGATCGGAGGGACATATTTTTGTTGATTCCACCTTTGACATTGGTGACAAAACTACTGACAATAGTGAGGGGGTAACCATGTCATCTTCACCTAAGTTTGCTGCTTTGGTTGATTCAGTGGATGATTTTTCTACAATGCATAAATTAAATCATATCGGACCTGGTTTTAGTAAAGAAGAGAGTATGTTTGGATCAAATGGTAATTCAGGTTCAAATGTCTATAAGGGGAAAACAATTGATCCTTCTGAAGTGTTTTCTGGATTCTGGGATAAAACACTTGATGGGACTAAAGATGATTCTAAGAATGATACTCATACATCTTATTCTGATGAATCGACAGGTAAAAGGACTGTTTCTGAATCTTCCTTTCACTTTTCATTCAGTACCATTCCTCCTGCACACGTACGAGATACCAGTACCATTCCTCCTGCACACATACGAGATACCAGGACCAAGGGTTCTGAATCTGATAATGCATTTCCAAATTGTATTGGGTCCGAGAATGACAACATGAACTCTTCAAAGGAGAGGAATTTCTCATTCTCCAACAGCAAAGCTTCCAATATTAGGAGTTATGTTACTCTAAGTGGTTCTGAATCTGATCATTTGGAATCTAAAGACAGCTCCAGACCACCTTTATCATCTTTCTCCCATCAATCCTCCTGTGTTGGCAAAGGTTCAGTTTGTGCAGATGCTTTAAACATCCATAACTTGCAAGCAACTGGCACTGAGGTAACAAATCATGTTGTGGAAAACCGCCACAGCACCGTCAGGTCCACTGGGATTGGATGCCTGAAGCATAACCATGCTGATTCTAGTTTAGCTTCTGAAACTAAAGAAAATTCTCATGCCAGTACAAAACACAGGAATAATGATGATGAATATGACACCCGGCCTGTCACTTCCTCTCATGTTGCTAGCTGTTCTGCAAATTCTGGAAGTGGTATAAAAACTTCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATATGTCAAAGCACTTTCCATTCTCTGTTGGGAGTGAGGTTGGTGAAAGACACAATGACAAGGTTTTTTTTTCTTATGAAATGTTTGTCAAGCTTTATAACTCAAACAAGGTGGAGTTATGCCCATTTGGCCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTATACTTCAGTGCTTGGCATTTACACCGCCTCTGACTGCTTATTTGCTTCAAGGATTACATTCTAAATCATGTGCACATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATTTTGAAGTCAAAGGACACAAAATCTTCCGTGTCTCCTATGAGCATAATCTCTCATTTACAGAATATTGGAAGTCAGCTTAGTAATGGGAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCAGGCTCCTTAGAAGAGGACACTACTTTAATGGGTCTAACATTTGGTGGTTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGATATAACAACCCTGGTGGAGGCTCTTCAACGATTTACAAGCACTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATGTTCTTACTGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAACCTATTCAATTTCCTGAAATACTTAACTTGGCGCCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTCCACTTAGATACCATGAATGCTGCCTTTTCGGGTCATTACGTGTGCTATGTGAAGAATATACAAAACAGGTGGTTCAAGGTTGATGACAGTGTGGTGACTGCTGTTGAATTGGAGAGAGTCTTGACTGTAGGAGCATACATGCTTTTATATGCAAGGTGCTCGCCTAGGGCTCCAAGATTAATCAGGAACAGAATACTATCCTCGGATTCAAAATGTAAAGTCAGCGGAAAGACTTTTGCAACGAAAGCAAGATATATATCTACAAATTCTGGTGTTCCTGAACATGTCAACAGTTCCATCTCTCCGGATGGCTCACCTGCATTGGAGTCTTTCTATTCAAAGTTTCACCACCTGAAAAAGATTTTAGAGGAAGACTCGTCCAGTGATAATTCATCCCTCATTAGCAGCAATTCTGATGAAGGTTCTTGCAGTACTGATAGCACCTGTGATTCAGCCAGTACAGATGACTTCACAGATTATCTTTTTGGTGATTCGGGAAATGGGTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACGTCCTCGTCCTCCTCATCTTCCCCCTTAAACTGTCGACATTCCCCACTCTCTGATATGGACAGATACGATTCAGTTTCTCCTGCTGCATCTGGTTTGTGCATTTCCATAGGTTCAAGTGTGGAGAAAGACAATCATGTATACAGAAATGGAGCAGTGAATGTTGAAAAGAGAGGGGTGGGTGTTTCTTGTTTGCATTCTAACACAACTTCACAGCATAGAGGGTTAGGTAGTGGTAGGATTAGTAGCAAGATTAGTAGTAGTAGGGAGACTGACTCTTTTGTGAAAGTAGGATCTAACCTTTGTAATGATACAGAATGTGGTGTATTACGTAGAAAAAGTATAGAACGGATTAAAATTTAG 3453 0.4136 MRVTGDLGFSSLVLLVVCLVVPVIGLVISRRWQVSEDKKEEIRRLLVLAVEETARAEKEAYGTAVTAPPSNQCAVCYFPATARCAQCKSVRYCSFQCQTVHWRQGHKLECSPSSTSHRSYDVTSDLGSKVVKQGYSGIYDEKSESERTECKSSFEKSSISDSCFSPKVSSWKDEKLRFESLAEGNITDSNWELSSNSFSGFSASIGSSDSSDDSSVCESVISNEHDRSEGHIFVDSTFDIGDKTTDNSEGVTMSSSPKFAALVDSVDDFSTMHKLNHIGPGFSKEESMFGSNGNSGSNVYKGKTIDPSEVFSGFWDKTLDGTKDDSKNDTHTSYSDESTGKRTVSESSFHFSFSTIPPAHVRDTSTIPPAHIRDTRTKGSESDNAFPNCIGSENDNMNSSKERNFSFSNSKASNIRSYVTLSGSESDHLESKDSSRPPLSSFSHQSSCVGKGSVCADALNIHNLQATGTEVTNHVVENRHSTVRSTGIGCLKHNHADSSLASETKENSHASTKHRNNDDEYDTRPVTSSHVASCSANSGSGIKTSVLKVVDQFRGSNMSKHFPFSVGSEVGERHNDKVFFSYEMFVKLYNSNKVELCPFGLINCGNSCYANAILQCLAFTPPLTAYLLQGLHSKSCAHKKWCFTCEFERLILKSKDTKSSVSPMSIISHLQNIGSQLSNGREEDAHEFLRHVIDTMQSVCLMEAGVNASGSLEEDTTLMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGDITTLVEALQRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDTMNAAFSGHYVCYVKNIQNRWFKVDDSVVTAVELERVLTVGAYMLLYARCSPRAPRLIRNRILSSDSKCKVSGKTFATKARYISTNSGVPEHVNSSISPDGSPALESFYSKFHHLKKILEEDSSSDNSSLISSNSDEGSCSTDSTCDSASTDDFTDYLFGDSGNGWSSVWRNSDSDTSSSSSSSPLNCRHSPLSDMDRYDSVSPAASGLCISIGSSVEKDNHVYRNGAVNVEKRGVGVSCLHSNTTSQHRGLGSGRISSKISSSRETDSFVKVGSNLCNDTECGVLRRKSIERIKI 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01733 1150 Pfam Ubiquitin carboxyl-terminal hydrolase 599 901 IPR001394 GO:0004843|GO:0016579
Vian4g01733 1150 ProSitePatterns Zinc finger MYND-type signature. 73 110 IPR002893 -
Vian4g01733 1150 Gene3D Cysteine proteinases 592 913 - -
Vian4g01733 1150 FunFam Ubiquitin carboxyl-terminal hydrolase 15 593 912 - -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 424 443 - -
Vian4g01733 1150 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 398 907 - -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 496 525 - -
Vian4g01733 1150 Gene3D - 62 116 - -
Vian4g01733 1150 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 599 904 IPR028889 -
Vian4g01733 1150 Pfam MYND finger 73 110 IPR002893 -
Vian4g01733 1150 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 600 615 IPR018200 GO:0004843|GO:0006511
Vian4g01733 1150 MobiDBLite consensus disorder prediction 381 407 - -
Vian4g01733 1150 FunFam Ubiquitin carboxyl-terminal hydrolase 15 64 114 - -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 498 525 - -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 322 336 - -
Vian4g01733 1150 ProSiteProfiles Zinc finger MYND-type profile. 73 110 IPR002893 -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 322 341 - -
Vian4g01733 1150 SUPERFAMILY HIT/MYND zinc finger-like 69 112 - -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 979 998 - -
Vian4g01733 1150 SUPERFAMILY Cysteine proteinases 595 906 IPR038765 -
Vian4g01733 1150 MobiDBLite consensus disorder prediction 360 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01733 Vian-Chr4 33459812 33469581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01733 577 951 Miscellaneous Gene Families AT4G31670 48.670 1.61e-117 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01733 K11855 - gmx:100795674 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01733 4 33459812 33469581 Vian4g01733 4 33459812 33469581 ECH