Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01732 ATGGTCTCACTCCCCGCCATGCATGGACATCAACCACTTATAGCTACTACTAGTAGCAGTAGCTACCTTCGTCCACATCCAGAAAAGTCATCAACAATGGATGCTAAGTTGGGCATTGGGCTATTTTTGTGTGTAGTTTGGGTGATGAGTGGCAATGCCACTGATCCTTGTGGTTCTCAACCGGATGAGTCGGACCTCAACGTGATTCCCGTCTACAGCAAATGCTCACCGTTCAAGCCACCCAAGGCAGACTCGTGGGACACCAGGATCGTGGATATGGCCTCAAAAGACCCTCTCCGGGTCAGGTACCTGTCCACCTTATTGGGCCAGAAGACCGTCTCCGCTGCCCCAATAGCTTCCGGTCAGACCTTCAACATCGGTAACTACATCGTCAGGGCAAAACTCGGAACCCCCGGTCAACTTTTGTTCATGGTTTTGGACACCAGCACCGACGAGGCCTTCGTCCCATGCTCCGGCTGCACGGGCTGCTCCGACACCACGTTCTCCCCCAAAGCTTCCACCAGCTACGGCCCATTGGACTGCTCCGTACCCCAGTGTGGTCAGGTCCGCGGGCTTTCCTGCCCCGCCACAGGAACCGGCGCCTGCTCCTTTAACCAAACCTACGCCGGCTCCTCTTTCTCCGCCACGCTCGTCCAAGACTCTCTCAGATTAGCCGCTGATGTTATCCCTAACTACTCCTTCGGCTGCGTCAACACCATCTCCGGGGCCTCAGTTCCGGCCCAAGGACTTTTGGGTCTGGGCCGCGGGCCACTGTCGCTTCTCTCCCAGTCCGGGACAAACTACTCCGGTGTATTCTCTTACTGCCTTCCTAGCTTCAAATCGTACTACTTCTCCGGGTCGCTCAAACTCGGGCCCGTGGGCCAGCCCAAGAGCATCCGGACCACCCCGCTTCTGCGCAACCCCCACCGGCCTTCTCTTTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGCGTCCTGGTGTCTTTCCCCAGCGAGTATCTTGAGTTTAACCCGTATACCGGATCCGGAACCATAATTGATTCGGGAACGGTGATCACCCGGTTCGTGGAGCCCGTGTACAACGCGGTGAGGGAGGAGTTCAGGAAGCAGGTGGGAGGCACGTTCTCAAGCATTGGAGCTTTCGACACGTGTTTTGTGAAGACGTACGAAAATCTGGCACCGCCAATTACCCTTCACTTCGAAGGATTGGACCTGAAGCTGCCATTGGAGAACAGCTTGATTCACAGCAGTGCCGGGTCGCTGGCTTGCCTTGCGATGGCGGCGGCCCCGGATAACGTGAACTCGGTGTTGAACGTGATTGCGAACTTTCAGCAACAGAATCTTAGAATTTTGTTTGATACCGTGAATAATAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAA 1407 0.5537 MVSLPAMHGHQPLIATTSSSSYLRPHPEKSSTMDAKLGIGLFLCVVWVMSGNATDPCGSQPDESDLNVIPVYSKCSPFKPPKADSWDTRIVDMASKDPLRVRYLSTLLGQKTVSAAPIASGQTFNIGNYIVRAKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQTYAGSSFSATLVQDSLRLAADVIPNYSFGCVNTISGASVPAQGLLGLGRGPLSLLSQSGTNYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVLVSFPSEYLEFNPYTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTFSSIGAFDTCFVKTYENLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01732 468 FunFam Aspartyl protease AED3 292 468 - -
Vian4g01732 468 FunFam aspartyl protease AED3 108 291 - -
Vian4g01732 468 Pfam Xylanase inhibitor C-terminal 314 463 IPR032799 -
Vian4g01732 468 ProSiteProfiles Peptidase family A1 domain profile. 129 463 IPR033121 -
Vian4g01732 468 SUPERFAMILY Acid proteases 122 467 IPR021109 -
Vian4g01732 468 Gene3D Acid Proteases 292 468 IPR021109 -
Vian4g01732 468 Pfam Xylanase inhibitor N-terminal 129 291 IPR032861 -
Vian4g01732 468 PANTHER ASPARTYL PROTEASES 39 461 IPR001461 GO:0004190|GO:0006508
Vian4g01732 468 Gene3D Acid Proteases 108 291 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01732 Vian-Chr4 33449940 33451346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01732 119 468 Miscellaneous Gene Families AT1G77480 26.854 5.74e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01732 - - gmx:100788630 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01732 4 33449940 33451346 Vian4g01732 4 33449940 33451346 ECH