Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01727 ATGGCATCATCAATCTCAGGCATTTACACCTCTTCCCCCTCTCTCAAACGATTCCCAAACCAAACCCCGCCGTTGACCCAACCTCTCCGCAAAGATCACGTCTCCTTCCACGCGCGCCGCGCCGATCGCACCCTAAGCCTCGCCACGCCGCGCGCAGTGGCTCGGGAGGTTTCAGACGGGGCGGCGGCGGCAGCGGCGGCGGAGAAGGGGTTGGAGAAAGATCCACGTGCGCTATGGCGGAGGTACGTGGATTGGTTGTACCAGCATAAAGAACTGGGTCTTTACTTGGACGTGAGTCGGGTCGGGTTCACGGACGAGTTCGTAAGGGAAATGGAGCCCCATTTTGGAAAGGCGTTTGAGGCGATGGAAGAGTTGGAGAAGGGTGCGATCGCGAATCCCGATGAGGGACGCATGGTGGGGCACTATTGGTTGAGGGACCCTAAGCGCGCGCCCAACTCATTCCTGAAGACGCAGATTGAGAACACCCTCGATGCTGTTTCCAAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAACCTCCTTCGTCACCGGAGGGTCGATTTACTCAAATACTGTCTGTCGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAGGCACTGGCTCCTGATAATCCTCCACTTAAGATAAGATTTGTTGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCGCAGCTTGGGCCAGAGCTAGCCTCAACACTTGTGATTGTGATTTCAAAGAGTGGAGGTACCCCAGAGACTAGGAATGGTTTGTTGGAAGTTCAGAAGGCCTTTCGTGAAGCAGGCTTGAATTTTCCGAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAAGGCTGGTTAGCTAGATTCCCTATGTTTGATTGGGTGGGAGGCAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCCCTTCAGGGCATTGATATCAGAGAAATGCTTGCTGGCGCATCATTGATGGATGAAGCAAATAGAAGCACTGTGTTAAGGAATAACCCTGCAGCTCTGCTGGCTTTATGTTGGTATTGGGCTACAGACGGTGTAGGATCTAAGGATATGGTTATTCTTCCATACAAGGATAGTCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATAGGGTTAATCAAGGAATTAGTGTTTATGGAAATAAAGGAAGCACTGATCAACACGCCTACATCCAACAATTGAGGGAGGGTGTACACAATTTCTTTGTTACATTCATTGAGGTGCTACGTGATAGACCTCCAGGTCATGACTGGGAACTTGAACCTGGTGTTACTTGTGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTGTATGCTAATGACAGAGAATCCATCACAGTATCTGTACAAGAAGTGACACCAAGAACAGTTGGTGCTCTTATTGCACTCTACGAACGAGCAGTTGGAATTTATGCATCCCTTATCAACATAAATGCTTATCATCAACCTGGTGTGGAGGCTGGTAAAAAGGCAGCTGGTGAAGTACTGGCACTTCAGAAGCGAGTGTTAGCAGTGCTAAATGAGGCAAGCTGCAAAGATCCCATTGAACCATTGACACTAGAAGAAGTAGCTGACCGTTGCCATGCTCCTGAAGATATTGAAATGATTTACAAGATTATTGCGCACATGGCCGCCAATGACAGAGCACTAATTGCTGAAGGCAGCTGTGGATCACCTCGTAGCATCAAGGTTTTTCTTGGGGAATGTAGCATTGATGAATCGTATGCTTGA 1854 0.4844 MASSISGIYTSSPSLKRFPNQTPPLTQPLRKDHVSFHARRADRTLSLATPRAVAREVSDGAAAAAAAEKGLEKDPRALWRRYVDWLYQHKELGLYLDVSRVGFTDEFVREMEPHFGKAFEAMEELEKGAIANPDEGRMVGHYWLRDPKRAPNSFLKTQIENTLDAVSKFANDVVSGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLNFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESITVSVQEVTPRTVGALIALYERAVGIYASLININAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKDPIEPLTLEEVADRCHAPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECSIDESYA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01727 617 Hamap Glucose-6-phosphate isomerase [pgi]. 42 540 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 SUPERFAMILY SIS domain 78 540 IPR046348 GO:0097367|GO:1901135
Vian4g01727 617 CDD SIS_PGI_2 372 536 IPR035482 -
Vian4g01727 617 Gene3D - 327 522 - -
Vian4g01727 617 ProSitePatterns Phosphoglucose isomerase signature 2. 513 530 IPR018189 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 CDD SIS_PGI_1 160 326 IPR035476 -
Vian4g01727 617 Gene3D - 141 326 - -
Vian4g01727 617 FunFam Glucose-6-phosphate isomerase 328 520 - -
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 513 526 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 379 400 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 191 210 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 481 499 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 499 513 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PRINTS Glucose-6-phosphate isomerase signature 303 321 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 Pfam Phosphoglucose isomerase 121 447 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 Pfam Phosphoglucose isomerase 479 538 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 FunFam Glucose-6-phosphate isomerase 143 326 - -
Vian4g01727 617 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 49 546 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vian4g01727 617 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 2 616 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01727 Vian-Chr4 33380270 33384680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01727 K01810 - gmx:100818441 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01727 4 33380270 33384680 Vian4g01727 4 33380270 33384680 ECH