Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01721 ATGGATTCCATTCCCTTTCGCGATGGCAACATACACGCGATTCTTGACTCTCGATATCTCAACTCGCCACTGGATGTTAATCACACTTTGCAGACTCATTCCTCTCTCATTCGGAGGCTTTCTCAAGAAAGGGAGTTAGAGGGCCACCTTGGCTGTGTCAATGCGGTGGCTTGGAATTCGAAAGGTACAATGTTGATATCCGGATCAGATGATACTCGGATCAATATTTGGAGCTATTCTGGTAGAAAACTTCTACATTCAATTGATACAGGACATACAGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCCGGAGATGCTGAAGTCCGTTTATTTAACTTGTCTCGCCTAAGTGGAAGTGGATCTAGCGACAATTCAATCATTGCTCCATCTGCACTTTACCAATGCCATGCTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGCAACCCTAATGTAGTTTGGAGTGCTAGTGAAGATGGGACCTTGAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGGTCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGTTCTAAAAGATCACTTGGTGATCCTCCTAAACAAGTCCTTTCTTTAAAGTCTTGTGATATTAGTTCAACTAGGCCGCATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGGTTATATGATAGAAGGATGCTGCCACCTCTAAGCTCATGTCGAAAAAGAATGTCTCCTCCTCCTTGTGTTAATTATTTTTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTACACTTAACTCATGTTACATTCAGTCCTGATGGACATGAGGTTCTCCTCAGCTATAGTGGAGAGCATGCTTACCTGATGAATGTAAATCATGCTGGAATGAATGAGATGCAATATACTTCAGGTGACGTATCAAAGATGATGACTTACTCTCCTATAGTTAATGGGATAGAGTTGCAGTCTTGTGTGTCTAATGTCTTCCCAAACGGGTTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCAGGAAACTGATAAAATATGCTAAGAAATCATTGGACAATGGGATACCCTATTATGGAATCGAGGCATGTAATGAGGTTTTGAATGGCTATAGCCATATCATTGGGTCTGCGCTTAAACATGAATGCTTGTGCACTCGTGCTGCACTATTGATCAAGAGGGATTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGAAAAATTGATAATTCCTCCTATAAAGCACTATTCTACATGTCAGAAGCACTGTCACAGTTGGGTAGACATGAAGATGCTTTGGATTTTGCTGTTGCTTCCCATTCACTGGCCCCACTCAAATCTGAAGTTGCAGAGAGAGTAGAGAATGTGAAGAAGGATATTGCGTTAGCTGAAGCTGAAAAAAATAGCAAGGCCAATGATGGTGCATCAAGGTCTGACATTCGAGGTGGAAGAATATTATCATTAAGTGACATACTCTATCGCCCCGAGGCTAATGGTGATGTTCCACAAGATGGTTCTAGATCAGACAGGGATGATTCTGATTATGATGAGGAATTGGAGCTGGACTTTGAAACATCAATATCTGGTGACGAGGCACAAGATCTTGATTCAAATATTCTTCATGGAAGTTTAAATGTTAGAATTCACCGAAGAGGTGACTCTAGAGACAATGCAGGTGCTAGTGGCCCAAGCGATTCACCTTCATCTTCGTCACAGAGCAGTAGAACATGTTATTTGCCTGAACCAGCTGTTGATATGAAACAGAGATTTATTGGCCATTGCAATATTGGGACGGACATAAAACAGGCCAATTTTCTTGGTCAAAGAGGAGAATATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACTGGTAGACTTATAAAAATTCTAAATGGTGATGGATCTGTTGTAAATTGTATACAATGCCATCCATTTGATTTTGTTGTCGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCCCCTGTTCCATCTTCTGTAGCTGATGGCTCAGCAGGACCAGAAACTTGTGATGTGTTGGCTGCTATTGAGAGCAATCAACAAAAGTTATCCCGTAGCCGCAATTCTATATTGCCCTTTGAGCTTTTGGAACCATTTAGAATGCACGACTTTCCTGAGGGTTCGTTACGCTTGCGTCCATTTGAATGTGCTCAAAGCTAA 2295 0.4183 MDSIPFRDGNIHAILDSRYLNSPLDVNHTLQTHSSLIRRLSQERELEGHLGCVNAVAWNSKGTMLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLSGSGSSDNSIIAPSALYQCHARRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLGDPPKQVLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHAYLMNVNHAGMNEMQYTSGDVSKMMTYSPIVNGIELQSCVSNVFPNGFPIKKNIAAKLDKCRKLIKYAKKSLDNGIPYYGIEACNEVLNGYSHIIGSALKHECLCTRAALLIKRDWKNDAHMAIRDCYAARKIDNSSYKALFYMSEALSQLGRHEDALDFAVASHSLAPLKSEVAERVENVKKDIALAEAEKNSKANDGASRSDIRGGRILSLSDILYRPEANGDVPQDGSRSDRDDSDYDEELELDFETSISGDEAQDLDSNILHGSLNVRIHRRGDSRDNAGASGPSDSPSSSSQSSRTCYLPEPAVDMKQRFIGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLIKILNGDGSVVNCIQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVADGSAGPETCDVLAAIESNQQKLSRSRNSILPFELLEPFRMHDFPEGSLRLRPFECAQS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01721 764 FunFam Transducin family protein / WD-40 repeat family protein 565 739 - -
Vian4g01721 764 MobiDBLite consensus disorder prediction 587 605 - -
Vian4g01721 764 Coils Coil 474 501 - -
Vian4g01721 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Vian4g01721 764 SMART WD40_4 81 123 IPR001680 GO:0005515
Vian4g01721 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Vian4g01721 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Vian4g01721 764 SMART WD40_4 137 177 IPR001680 GO:0005515
Vian4g01721 764 SMART WD40_4 39 78 IPR001680 GO:0005515
Vian4g01721 764 SMART WD40_4 212 245 IPR001680 GO:0005515
Vian4g01721 764 SUPERFAMILY WD40 repeat-like 39 695 IPR036322 GO:0005515
Vian4g01721 764 MobiDBLite consensus disorder prediction 579 605 - -
Vian4g01721 764 Gene3D - 613 750 IPR015943 GO:0005515
Vian4g01721 764 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Vian4g01721 764 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Vian4g01721 764 Gene3D Tetratricopeptide repeat domain 354 488 IPR011990 GO:0005515
Vian4g01721 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 10 735 IPR045151 -
Vian4g01721 764 SUPERFAMILY TPR-like 401 472 IPR011990 GO:0005515
Vian4g01721 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Vian4g01721 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Vian4g01721 764 MobiDBLite consensus disorder prediction 523 543 - -
Vian4g01721 764 Gene3D - 27 131 IPR015943 GO:0005515
Vian4g01721 764 Gene3D - 132 313 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01721 Vian-Chr4 33303619 33319963 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01721 K11807 - gmx:100793917 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01721 4 33303619 33319963 Vian4g01721 4 33303619 33319963 ECH