Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01717 ATGCGTTTATTGGTTCCCAGAGGAAGAAGAATCGTCAGAAGAAGCATGACATGTCTATGCCTTACCCATTCACTCACTCAAACCCATAGCCCCTTCCCTTCTCTACACAATAACAGAAACTCCCTCTTTCAGTTTTTCTCGGGTATTCTCCGACCTTCAATTCGCCCCTTTTCCGCTAACTTCAACGGTGGGCCCACGTCTGCTGCATCTTCTTCTGCAATAATGGCCGATTTCCACGCTGATTCCGTCACTTACCTCACACAGCGAGAAGCCGCTGAGATTGATGAGACGCTCATGGGTCCTCTCGGCTTCAGCGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTGCTTCCATTTCTGAGGTTTACAAACCCACTGAGCATGGTCGGGTTCTTACTATATGTGGACCTGGTAACAATGGTGGTGACGGTCTGGTGGCTGCTCGCCACCTGCATCACTTTGGTTATAAGCCCTTTGTGTGTTACCCAAAGCGTACCCCCAAGCCTCTCTATTCTGGATTGGTTACTCAGCTTGAAGCACTGTCTATCCCTTTCTTGTCAGTGGAAGAACTACCGTCAGATCTTTCAAATGACTTTGACATTCTTGTGGATGCGATGTTTGGATTCTCATTTCATGGTTCTCCCAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCTCTTTGCACGATAATGATCAAATTGATAAAAAAAGACCAGTTATAGTCTCTGTAGATATTCCCTCTGGTTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAGCCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTAGGCGCAAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCAGCTATTGCAGAAAAATATAAGCTTGTGCTTCCACCTTATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAGTTGATATCTCAGCTCTAAGAGAGAATTACATCTCACCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCAATTAATCAGTTTCGCAAATGGTTCGATGATGCAATGGCTGCTGGTTTGAAGGAACCAAATGCCATGGCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTTTTGCTAAAAGGGTTGGATAAAGACGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTGTCTGAAAATCCTCGAGCATCTCTGCTTTTTTACTGGGATGGTTTAAACCGTTCGGTACGGGTAGAAGGGCCCGTTCAGAAAGTCTCTGATGAGGAATCGGAAGAATATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTTAGCAAGCAGAGTACTGTAGTACCTGGTAGGCATGTTCTTTATCAGGAGTACAAAGAACTGGAACAAAAATACGCCGATGGAAGTATGATCCCTAGACCTAACTGGGGAGGATATAGACTCACACCACAACTTTTTGAGTTTTGGCAAGGACAGAAATCTCGCTTGCACGACAGGTTGCAATATACTCCCCATGAGATCAATGGACAGCGGCTGTGGAAGATTGAGCGGTTGGCTCCCTGA 1620 0.4593 MRLLVPRGRRIVRRSMTCLCLTHSLTQTHSPFPSLHNNRNSLFQFFSGILRPSIRPFSANFNGGPTSAASSSAIMADFHADSVTYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVAASISEVYKPTEHGRVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYSGLVTQLEALSIPFLSVEELPSDLSNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLHDNDQIDKKRPVIVSVDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLVLPPYPGTSMCVRIGKPPQVDISALRENYISPEFLEEQVEADPINQFRKWFDDAMAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDGFVWYTNYESRKARELSENPRASLLFYWDGLNRSVRVEGPVQKVSDEESEEYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEQKYADGSMIPRPNWGGYRLTPQLFEFWQGQKSRLHDRLQYTPHEINGQRLWKIERLAP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01717 539 Gene3D - 334 531 IPR012349 -
Vian4g01717 539 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 495 539 IPR019576 -
Vian4g01717 539 NCBIfam NAD(P)H-hydrate epimerase 88 282 IPR004443 -
Vian4g01717 539 NCBIfam pyridoxamine 5'-phosphate oxidase 347 539 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vian4g01717 539 Pfam Pyridoxamine 5'-phosphate oxidase 356 442 IPR011576 -
Vian4g01717 539 FunFam NAD(P)H-hydrate epimerase 341 539 - -
Vian4g01717 539 Pfam YjeF-related protein N-terminus 107 279 IPR004443 -
Vian4g01717 539 ProSiteProfiles YjeF N-terminal domain profile. 91 307 IPR004443 -
Vian4g01717 539 PANTHER PYRIDOXINE-5-PHOSPHATE OXIDASE 326 539 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vian4g01717 539 SUPERFAMILY FMN-binding split barrel 339 539 - -
Vian4g01717 539 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 505 518 IPR019740 GO:0016638
Vian4g01717 539 Hamap NAD(P)H-hydrate epimerase [nnrE]. 87 322 IPR004443 -
Vian4g01717 539 Gene3D - 82 324 IPR036652 -
Vian4g01717 539 SUPERFAMILY YjeF N-terminal domain-like 84 314 IPR036652 -
Vian4g01717 539 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 333 539 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vian4g01717 539 FunFam NAD(P)H-hydrate epimerase 83 324 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01717 K23998 - gmx:100795497 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01717 4 33250864 33256832 Vian4g01717 4 33250864 33256832 ECH