Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01687 ATGGCGAACCACCCCCTCTCCGCCGGAGTCAGACGTTTTGTGGTCGGGACACGAACTCTTTGTAGCACAGTTGCTTCACGCGCTTCGACGTTGCACGTGCCGTTCTTGCGCAAGCTCAAATCCCCAAAGCAGAATCCATTGCCGGTGCTTCAAAATTGGGTGGACGAAGGCAACGATGTTTCACCCTCCCAGTTCAGAAGCATCGCCAGAACCCTAGTCAAATCGAAGCGCTACCACCACGCCCTTGAGTTATTTAAGTGGATAGAAAATCAGAAGAATTTCCGTATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTATGGTTTAATGGAAGCTGAAGAATATTTTATGAATCTACCCGACTCGGCTACAAAGAAGGCGGCTTGTCTCACACTTCTTCGTGGATATGTAAGATATAGGGATACTACTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGAGTTGGGGCTAGTGGTGAGTCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACCTGTGAGTACAGGAAGGTGCCCCTTGTTATCCAGCAAATGAAGCGGAATAAAATACCCTGCAACGTTCTCTCCTACAATCTTTGGATGAATGCCTATAGTGAGGAAGAAGGATATGGGATTGCAACAGTAGAGGCAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGTAGTCTTGCTACATTGGCCAATGTTTACAAGAAAGCAGGGCAACCTAAGAAAGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTGACTACCTGTAATCACTTCGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGATAAGGAGGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGATAAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATCCTTGGTGAAGCTCGGGGACATTCTGCAAGCCGAGAGAGTCTTCTCAGAATGGGAATCTAATTGTCGGAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGGATGGATTAATGGAAGAAGCTGAATCATTACATCTCCACACGTTGCAAAAGGGTGGCTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATACGTGAATAGGAAAAAAATAGACGAGGCTTTTATTGCAATGAAAAGAGCTTTGGCTATGACAAAAAATTGTCATTGGAGGCCACCACATGAACTTGTGTTGGCCATTGCGGAGATTTTGGAGAAAGATGGGAATCTTGAATATGCAAACATTTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTACCATTGTATAAAATATTGCTAAGAATGCACCTTTATGCCAACAAACCACCTTTACATATCCTTAAAATGATGGATGAAGATAAGATTGAGATGGATGATGAGACACGTTCCATTGTTAAAGCTTTCACTTTGTAG 1491 0.4192 MANHPLSAGVRRFVVGTRTLCSTVASRASTLHVPFLRKLKSPKQNPLPVLQNWVDEGNDVSPSQFRSIARTLVKSKRYHHALELFKWIENQKNFRMIPVDHAMKLELIIENYGLMEAEEYFMNLPDSATKKAACLTLLRGYVRYRDTTKAEALMVKLYELGLVVSPHPFNEMMKLYLVTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNAYSEEEGYGIATVEAVFRQMQNDKNVEVGWSSLATLANVYKKAGQPKKAILVLKDAEKKLTTCNHFGYFFLITLYASLKDKEGVLRLWEASKAVDKRISCANYICILTSLVKLGDILQAERVFSEWESNCRKYDIRVSNVLLGAYVRDGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVNRKKIDEAFIAMKRALAMTKNCHWRPPHELVLAIAEILEKDGNLEYANIYITDIHNFGLASLPLYKILLRMHLYANKPPLHILKMMDEDKIEMDDETRSIVKAFTL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01687 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Vian4g01687 496 Gene3D Tetratricopeptide repeat domain 32 218 IPR011990 GO:0005515
Vian4g01687 496 Gene3D Tetratricopeptide repeat domain 240 439 IPR011990 GO:0005515
Vian4g01687 496 Pfam Pentatricopeptide repeat domain 167 212 IPR002885 -
Vian4g01687 496 Pfam PPR repeat 348 367 IPR002885 -
Vian4g01687 496 PANTHER OS12G0527900 PROTEIN 36 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01687 Vian-Chr4 32872209 32874902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01687 39 434 EF-hand Containing Proteins AT1G02150 32.242 5.22e-74 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01687 - - gmx:100803685 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01687 4 32872209 32874902 Vian4g01687 4 32872209 32874902 ECH