Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01682 ATGGAGAGCTTCAAGGGAGACGACGAAACAGAGAAAAATCTTGCAGTAGCTCTCCTACAACCAGAACAGGCGGTTATTCATGCAGAACAACGACACGGCCAATCGTACGAGGAACAAAGTTTCGGTAACAAACTCTGGGTCGAAACGAAGAAGCTATGGGTAATTGTGGGGCCCTCCATCTTCAGCCGCCTGGCCTCGTTCAACATGAACGTTATCACCCAAGCCTTCGCCGGTCACTTGGGTGAGGTGGAACTCGCCGCCATTTCTATAGCGAACACCGTCATCGTCGGCTTCAATTTCGGCCTCCTGCTGGGGATGGCGAGTGCGTTGGAGACACTGTGCGGGCAAGCGTATGGCGCGAAGAGATACCACATGTTGGGAATATACATGCAGAGGTCATGGATTGTTCTCTTCTTGTGCTGTTTCCTGCTGTTGCCGTTTTACATATTCGCGACGCCGCTTCTGAAGTTTCTGGGACAGCCGGATGATGTGGCAGAGTGGAGCGGCGTGGTGGCGGTGTGGCTGATTCCTCTGCACTTCAGTTTCGCGTTTCAGTTTCCTCTGCAGAGGTTCCTCCAGTGCCAGCTGAAGACGGCGGTTATTGCGTGGGTATCCCTGGCGGGTTTGGTGGTGAATGCGGTAACCAGTTGGCTCTTGGTGTATGTGTGGGATTTTGGACTTTATGGTGCAGCTATTTCTTTGGACATATCATGGTGGGTTTTGGTTTTTGGCATGTATGCTTACGCTGCCTATGGTGGTTGCCCTTTAACTTGGAAAGGTTTCTCAGTTGAAGCCTTTTCTGGACTCTGGGAATTCCTCAAACTCTCTTCTGCTTCTGGGGTCATGTTATGCTTGGAAAATTGGTACTACAGAATACTCGTTCTTATGACTGGCCAGTTGGAGAATGCCACCATAGCCGTTGATGCCTTGTCTATATGTATGACCATTAATGGGTGGGAGATGATGATTCCCCTGGCTTTTTTCGCCGGTACAGGAGTAAGGGTGGCAAACGAGCTAGGTGCAGGGAATGGAAAAGGAGCAAAATTTGCAACGCTAGTGTCAGTGACAGAATCAATAGTGATTGGGGTTGTGTTCTGCGTTCTGATAATGATGTTTCATGACTATTTGGCTTACATATTCACCACCAGCTCTTCGGTGCTACAAGCCGTTGACGACATGTCATTCCTCTTGGCCATAACCATTCTTCTCAATAGTGTTCAGCCAATTTTGTCAGGAGTGGCTGTTGGTTCGGGATGGCAAGCATATGTAGCATACATAAATATAGGAAGCTATTACCTCATCGGTCTCCCACTCGGAATTATCATGGGATGGGTCTTCAAAACTGGTGTTGCTGGTATATGGACTGGCATGATCTTCGGTGGCACAGCACTTCAAACATTGATACTCATCATAGTAACCATACGATGTGATTGGGAAAAGGAGGCGGAGAAAGCTCGGTTTAGCGTGAATAAGTGGTCAAGATCTAATTCCAATGGCGCACTGCAAATTCCCAATTAA 1518 0.4835 MESFKGDDETEKNLAVALLQPEQAVIHAEQRHGQSYEEQSFGNKLWVETKKLWVIVGPSIFSRLASFNMNVITQAFAGHLGEVELAAISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRYHMLGIYMQRSWIVLFLCCFLLLPFYIFATPLLKFLGQPDDVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLAGLVVNAVTSWLLVYVWDFGLYGAAISLDISWWVLVFGMYAYAAYGGCPLTWKGFSVEAFSGLWEFLKLSSASGVMLCLENWYYRILVLMTGQLENATIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATLVSVTESIVIGVVFCVLIMMFHDYLAYIFTTSSSVLQAVDDMSFLLAITILLNSVQPILSGVAVGSGWQAYVAYINIGSYYLIGLPLGIIMGWVFKTGVAGIWTGMIFGGTALQTLILIIVTIRCDWEKEAEKARFSVNKWSRSNSNGALQIPN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01682 505 CDD MATE_eukaryotic 48 484 IPR045069 GO:0042910|GO:1990961
Vian4g01682 505 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 478 - -
Vian4g01682 505 NCBIfam MATE family efflux transporter 58 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian4g01682 505 Pfam MatE 280 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian4g01682 505 Pfam MatE 58 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01682 Vian-Chr4 32825901 32832313 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01682 K03327 - gmx:100500204 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01682 4 32825901 32832313 Vian4g01682 4 32825901 32832313 ECH