Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01681 ATGACGCAGCAAAAGCGGTTCAAAAATTTGACCCAAAACCTCAAAGACAAAGCCTCCGTCATCGCCGCGGTCCTATCCCCGAAGCGCCAAGTCTCCTCCGTCCGGGTTCACGTTCTACGCGCCACCACGCACGCCCTCACGGCTCCTCCCTCCGAAGAAACCATCGCCGCCGTACTCACGGTGGGGCAGGGCTCCAACCGCAACCCGCGCGCCTGCATCGACGCGCTCATGGACCGCCTGCACAACACGCGCAGCGCCACGGTGGCGCTCAAGTGCCTCTTCACGCTACACAACGTCGTCGTGAAGGGACCCTTCACGTTGAAGGACCAACTCTCGTGTTACCCTTCCTACGGCGGCCACAACTTTCTTAACCTCTCGAACTTTCGCGACGAGTCGGACGTGGAATCGGTGGAGCTGAGTTCGTGGGTGCGGTGGTACGCCGGCGTGCTGGAACAGAGCCTCACGGTTTCCAGAGTCTTGGGGTATTACCTCAACGCCTCTCGCGAATCCCAAGAAAGCAAAAAGATTATCCTTTCGAACGCGTCGGATGCGGATTTGTTGTACAAGGTGGAGGCGCTGGTGGGTTTCGTCGAACAAATAAGCCACGTGCCTGATTCGCTGCACCTGCAGAGGAACGAGTTGGTGTACGAGGTGGTACGGCTGGTGGGCGAGGATTATAGGAGCGTGCAGGTTGAGATTTTGTTGCGCGTGGAAGAACTTGGGGAGAGAATGGATGATCTTGATGTGGGTGAGTTGAACGAGTTGGTGGGATATTTAGGGAGATTGGAGGAGACTCAGGAGAAGTTGGTTCTTTTGTTCGTGAATAGGAAAAGGAACAATGGATTCTGGGATTTGGTTCAAAAGACTAAGGTCAAGGGAATGGCCAAAAAGAGGGAGATTGAAGGGAAGTGGCTCACGGTGGTCGTTAACACCGGCGCCGCCGAATTGGCTCGATCCACCAACCCGTTTCTTGACCCGGGGCAACTCAGTCCGGTCCCACGAATAGATTTTGCAACGGTAAGGTGA 1026 0.5565 MTQQKRFKNLTQNLKDKASVIAAVLSPKRQVSSVRVHVLRATTHALTAPPSEETIAAVLTVGQGSNRNPRACIDALMDRLHNTRSATVALKCLFTLHNVVVKGPFTLKDQLSCYPSYGGHNFLNLSNFRDESDVESVELSSWVRWYAGVLEQSLTVSRVLGYYLNASRESQESKKIILSNASDADLLYKVEALVGFVEQISHVPDSLHLQRNELVYEVVRLVGEDYRSVQVEILLRVEELGERMDDLDVGELNELVGYLGRLEETQEKLVLLFVNRKRNNGFWDLVQKTKVKGMAKKREIEGKWLTVVVNTGAAELARSTNPFLDPGQLSPVPRIDFATVR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01681 341 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Vian4g01681 341 SMART enth_2 32 164 IPR013809 -
Vian4g01681 341 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 293 IPR045192 GO:0048268|GO:0072583
Vian4g01681 341 Pfam ANTH domain 35 226 IPR011417 GO:0005543
Vian4g01681 341 SUPERFAMILY ENTH/VHS domain 34 161 IPR008942 -
Vian4g01681 341 CDD ANTH_N_AP180_plant 35 157 - -
Vian4g01681 341 Gene3D - 4 163 IPR008942 -
Vian4g01681 341 FunFam Putative clathrin assembly protein At4g40080 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01681 Vian-Chr4 32822320 32823345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01681 - - gmx:100788852 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01681 4 32822320 32823345 Vian4g01681 4 32822320 32823345 ECH