Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01673 ATGCCCCTCCAGCCATTACTCTGCGGTTCAAAAGTCGCATCCCAATCCACACTTTTCGCTTCGGTGTTTTCCGCAAGAAACAACGCCGGCCGCTGTTCGTTCACCGGAAATTCGTCAGTCCGTGGCGTAAGGCCGGTGAGGTTTATGAAGCAAGCATCGGGAAGCATAACGAACGATGAACATGGAGTTTTTAGCGAGACAATGGATCGTTCCAAACACAGGACACCTAATGCTTATGGCGGTCGTGCTCAAGAAGGGGTTCTTGAGGAAGAATCCTCCAAAGTAATAGAGAGCAGACCATCATGGAAAACTTTACCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGTTGACAGTGGCATCAATTTTTCTATTTTTTCACGACATGCAACTGCTGTCACACTTTGTTTGGTCCTTCCTGAGAGGGGAAGTATTGGCATATTGAATGGCGGCATGATAGAAATGGTATTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATTTGTATTGAGGATCTTCCTCGAAGCAATGTTCTATACGGATATCGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAACATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGACGGCCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGATTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTCGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGTTTGGACAGCAAAATTCGTGGTAGCTATCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAACGCAGTAGAATTGCTGCCTGTCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGTCAAAATCCCAGAGATCACATGATTAATACGTGGGGTTATTCTACAATAAATTTCTTTTCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCTCGAGAGTTCAAAGAGATGGTTAAAGCCTTACATTCTTCTGGTATAGAGGTTATTTTGGATGTGGTCTATAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACCTCATTCCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGTAATACATTAAACTGTAACCATGCTGTGGTTATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTTCTGTGTCGAGGAATTGATGGCTCCCCCCTTAATGCCCCCCCAATTATTAGGTTCAACCATTGGGATGAGAGTGAGGATGAAGGTGTGAAGGTGAGGGGTGAGAGTTTAAGGCCAAGATTTAGGGTGAGGGTCAAGATAAGGCTTCGTGGAGAGGTCAAGGCAATTGCTAGAGATGCAGTCTTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTTTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTATGGTGTAAAGGGGAGCTTTGCTACTCGTATTGCTGGGTCTTCTGATCTTTACAGAGTGAACAAGCGAAAGCCATATCATAGTATCAACTTTGTTATTGCACACGACGGATTCACCTTGCGTGACCTTGTTTCGTACAATTTGAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGATGGTAGCAATGATAATTTTAGTTGGAATTGTGGTTTCGAAGGGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAAAACTTTCACTTGGCACTAATGATATCTCAGGGTACACCAATGATGCTAATGGGAGATGAATATGGTCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACCGCCATAAATAATTTTTTGTGGGATCAGGCAATATTCAGTCATGAAAGTTTTCTCAGTAAGAATGAAATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAGATTTCTTGCATTCACGCTTCATGAAAGGAGCGGGGCAGATGTCTATTTGGCATTTAATGCTCACGATTACTTTATCAAAGCACTGCTGCCCACACCTCCAGAAAAGAGAAAGTGGTTCCGTGTGGTGGACACTAATCTCAAATCACCGGACGACTTTGTTCTTGATGGTGTCCATAGCATTGGAAACACGTACAATATAGCTCCATACTCCTCGATTCTTCTTGAGGCGAAGTTTTGA 2394 0.4261 MPLQPLLCGSKVASQSTLFASVFSARNNAGRCSFTGNSSVRGVRPVRFMKQASGSITNDEHGVFSETMDRSKHRTPNAYGGRAQEGVLEEESSKVIESRPSWKTLPGQAFPLGVSEVDSGINFSIFSRHATAVTLCLVLPERGSIGILNGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSNIVLVDPYAKLVDGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTIDESSGLDSKIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRQNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKEMVKALHSSGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHAVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPIIRFNHWDESEDEGVKVRGESLRPRFRVRVKIRLRGEVKAIARDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRIAGSSDLYRVNKRKPYHSINFVIAHDGFTLRDLVSYNLKHNEANGEGGNDGSNDNFSWNCGFEGETDDASVRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQAIFSHESFLSKNEITWHEDNWDNHDSRFLAFTLHERSGADVYLAFNAHDYFIKALLPTPPEKRKWFRVVDTNLKSPDDFVLDGVHSIGNTYNIAPYSSILLEAKF 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01673 797 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Vian4g01673 797 SMART aamy 259 697 IPR006047 GO:0005975
Vian4g01673 797 PANTHER GLYCOGEN DEBRANCHING ENZYME 91 796 - -
Vian4g01673 797 CDD E_set_GDE_Isoamylase_N 110 259 IPR044505 -
Vian4g01673 797 Gene3D Glycosidases 235 705 - -
Vian4g01673 797 SUPERFAMILY Glycosyl hydrolase domain 703 796 - -
Vian4g01673 797 SUPERFAMILY (Trans)glycosidases 238 694 IPR017853 -
Vian4g01673 797 SUPERFAMILY E set domains 106 243 IPR014756 -
Vian4g01673 797 Gene3D Immunoglobulins 91 229 IPR013783 -
Vian4g01673 797 FunFam Glycogen debranching enzyme 235 713 - -
Vian4g01673 797 Pfam Alpha amylase, catalytic domain 280 396 IPR006047 GO:0005975
Vian4g01673 797 CDD AmyAc_Glg_debranch 239 693 - -
Vian4g01673 797 Gene3D - 706 797 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01673 Vian-Chr4 32709678 32732173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01673 82 796 Glycoside Hydrolase AT4G09020 69.919 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01673 K01214 - gmx:100806342 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01673 4 32709678 32732173 Vian4g01673 4 32709678 32732173 ECH