Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01645 ATGGCGGGTGGGGTGTTGCCTGTGGATTCATCACCAATTATCAATGGCTTCGCTTCCAAGATCACGCTCTCAATCGTCATCACCTGCATCGTTGCTGCATCCAGTGGACTCCTTTTTGGATATGACCTCGGAGTTTCAGGAGGAGTGACAACAATGGTGCCGTTTCTGGAAAAATTCTTCCCAGACATATTAAGAAAGATTGGTGGCAGTGAAGTGAACATGTACTGTGTTTATGACAGTCAAGTTTTGACATTGTTCACCTCTTCTCTGTATCTTGCGGGGTTAGTATCGTCTCTGGTAGCTAGTCGAGTAACAACAGCAATAGGTCGAAGAAACACCATCTTATTAGGTGGTGTTGTGTTTCTTCTCGGTGGTTCCCTTAATGCAGGTGCAGAGAATATCGTTATGCTCATTCTGGGTCGTGTTTTACTTGGATTTGGAGTCGGTTTCACTAATCAAGCAGCACCGTTGTACCTTTCAGAAATTGCTCCACCCAAATGGAGAGGAGCATTCAACACAGGCTTCCAATTCTTTTTAGGAGTTGGATCATTGGTCGCTGGCTGCATAAACTATGCAACTGCGAAGCACACATGGGGGTGGCGAGTTTCGCTTGGCATCGCTGTGGCGCCTGCAGCAGTTATGACAATCGGTGCCTTGCTTATAACTGACACTCCCAGTAGCTTGGTTGAACGTGGCAAAATAGAAGAAGCCAGAAGAGCATTGCGGAAGGCCAGAGGATCCTCCTTTGATGTTGAACCTGAATTGGACGAACTCATTAAGTGGTCACAGATTGCAAAATCTGTAGATAAGGAGCCCTTCAAAACCATATTTGAGAGGAAACATCGACCCCATTTGGTCATGGCAATTGCTATTCCATTTTTTCAGCAAATGACAGGGATTAACGTTGTGGCATTCTATGCTCCTAACCTGTTTCAATCAGTGGGTTTGGGACATGATGCAGCTTTACTTTCTGCCATTATACTCGGAGCAGTCAACCTTGCCTCTCTCCTCGTCTCAACTGCTGTTGTTGATCGCTTTGGTCGAAGGTTCTTGTTCATATCTGGTGGCATTCTCATGCTTGTTTGTCAGATTGCGGTGTCAGTTATGCTGGCAGTGGTAACTGGTGTTCATGGTACAAAGGACATATCAAAAGGCAACGCAATTGGAGTGTTGGTGCTGCTTTGTTTCTACACTGCTGGTTTTGGGTGGTCATGGGGACCTCTCACGTGGCTAATTCCGAGTGAGATTTTCCCGTTAAAAATCAGAACCACTGGACAAAGCATAGCTGTGGCGGTGCAGTTTATTACCATATTTATATTGTCCCAGACATTCTTGACAATGCTGTGCCACTTTAAGTTCGCTTCCTTCGTGTTCTATGCGGGTTGGATTATAGTTATGACAATCTTTGTTATACTTTTCGTGCCAGAAACAAAGGGAATTCCTTTGGAATCAATGTACACCATATGGGGAAAACACTGGTTCTGGCGCCGCTTTGTAAAGGAAGTTACTCAACAAAATCTTCCATGA 1527 0.4499 MAGGVLPVDSSPIINGFASKITLSIVITCIVAASSGLLFGYDLGVSGGVTTMVPFLEKFFPDILRKIGGSEVNMYCVYDSQVLTLFTSSLYLAGLVSSLVASRVTTAIGRRNTILLGGVVFLLGGSLNAGAENIVMLILGRVLLGFGVGFTNQAAPLYLSEIAPPKWRGAFNTGFQFFLGVGSLVAGCINYATAKHTWGWRVSLGIAVAPAAVMTIGALLITDTPSSLVERGKIEEARRALRKARGSSFDVEPELDELIKWSQIAKSVDKEPFKTIFERKHRPHLVMAIAIPFFQQMTGINVVAFYAPNLFQSVGLGHDAALLSAIILGAVNLASLLVSTAVVDRFGRRFLFISGGILMLVCQIAVSVMLAVVTGVHGTKDISKGNAIGVLVLLCFYTAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAVQFITIFILSQTFLTMLCHFKFASFVFYAGWIIVMTIFVILFVPETKGIPLESMYTIWGKHWFWRRFVKEVTQQNLP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01645 508 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 PRINTS Sugar transporter signature 138 157 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 FunFam Sugar transport protein 13 18 492 - -
Vian4g01645 508 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 17 500 IPR045262 GO:0015144
Vian4g01645 508 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 478 IPR020846 GO:0022857
Vian4g01645 508 CDD MFS_STP 31 476 IPR044778 GO:0015145|GO:0015749
Vian4g01645 508 NCBIfam sugar porter family MFS transporter 24 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 SUPERFAMILY MFS general substrate transporter 31 484 IPR036259 -
Vian4g01645 508 Gene3D MFS general substrate transporter like domains 17 492 IPR036259 -
Vian4g01645 508 ProSitePatterns Sugar transport proteins signature 2. 143 168 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian4g01645 508 Pfam Sugar (and other) transporter 29 489 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01645 Vian-Chr4 32330943 32337122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01645 52 503 Organic Solute Cotransporters AT1G34580 63.297 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01645 K24193 - gmx:100817162 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01645 4 32330943 32337122 Vian4g01645 4 32330943 32337122 ECH