Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01643 ATGTCAGAGGACAAGAGAGGCGCGGCAGCAGAAGGGGGAGAAACGAGGTTTGTTGCAAATCCCGATGCATCCAATTCCACACCAACCTCCACACCACTGTCCTGTCTCCGCGTCCTTCACCCTGATCACGTGGCTGTTGGGTCCCCCATTACCAGGGTTCCTCCATATTCAGCACCACCTCCCTCTCCCAAATTCTGGGTGGACCATGACCCTTCGACTCTCACTCACACCCACACCAACTGGGCCCATGATTCCTCACTGATTTCCGATTTCTCCAAAATGAATCTCCTCGATCAAATCCAAACCGATGTGGACCCCTGTCCTTATTTTAATCAACCAGGAACCCTTCCAAACCCGTATGATTCTGGTTTCAATGAAACAGAAAACCTTCCATACCATCCCCATGTCAACAATGCCCGCTTGTTCAATGAACAAGGAATTCTCCCCTATCATGTTAACAATTCGGCTTTGTTCAACGGGACGGAGAACCTTCCTTATCACCACCATGTTAACAACGCCGGATTGTTCACTGAAACCGGAACCCTCCTCCCCTATCACCACCATGTTAATAACGCTGGACTTTTCGATAAAGGTCACACTTTTGACACTCCAGATGATCAAGGTAACCTTCTGTATCATCACCCCGTGGACCAGAGGAGGAATCAGTTACAGGCCACAAGTAGTGGCAACTATCCCATTTTTCGTGATCGTTATATGGCTCCACATTCTTCCGGAGGGTTCAATAGCTTCGTCAGGTTATCTTCTATTGCGGCTATGAATTGCAATGCTAATAATCCTTCGCATCATTATGTTTCAGCGAAAGATAAGACTGAACCTCCTCACTTTCTGCCTCCGAAGAGAGTGGGGGGAGACCCTGCGGCTTTTAGGTGTGACAATAGCATTATCTTGCAAGGGAGAGATTCAAGACACTGCTTTGAGAATGGGTATGGTTCTTCTCATAGAAGGGGTCCTCCCCGTGACGAGTTTTGTGTGAGTGGCAGTGTTTCCAAGAACATTTTTCCTGGTGGTCCTTCAGGTCAAAACGCTGGGGAATTCTCACTGCCCATGCCACTGGATTATTATTCTGTGCCGGAGTCTCAGCGTTGCATTTACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTCCTGCAGCGGAAGGTTGATGAGGGAAGCTTCGAAGATATGTGTGTTGTATTTGAGGGAATCATCGGGAGTGTTGTTGAACTTATGGTGGATTCTTTCGGGAATTATCTGGTGCAGAAGTTGCTCGATGTTTGCACCGATCATCAACGACTGCAGATTGTGCTCATGTTGACTAATCGACCAGGCCAGCTCGTTAGAATCTCTTTGAATACTCACGGCACGCGCGTGGTGCAGAAGTTGATTGAGACCCTCGATTCCGATGATCAAATTTCATTGGTCAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCACGTCATTCAACGTTGCTTGCAATGCTTCAGCTCTCAAGATAACCAGTTTATCTTCGATGCTTCTGTGAAGTATTGTGTTGAAGTAGCTACTCATCAGCATGGATGCTGTGTATTGCAACGCTGTATTTATTACTCTATGGGTAAAAATCGAGATAGGCTGATCTCAGAAATATGCAAGCATGGACTTCTCCTCGCCCAGGATCCATTTGGAAACTATGTTGTTCAATATATTATAGAAACTGATACTCCAACTGCCGTAGCCAAAATGCTTGGTCAGTTTAAAGGGAATTATGTACATTTGTCTACACAGAAATTCAGCAGTCATGTGGTTGAAAAATGTCTCAGAAATGTTGGAGATACGAGGTCCAGGATAGTTCGAGAATTGCTGGCTGCCCCTCATTTTGAACGACTTTTGCAAGATCCATATGCCAATTATGTCATTCAATCTGCTCTCTCCTTCACCAAGGGCCTTCTGCATGCTTCTTTGGTTGATGCAATTCGTAATTACAAAATGTTGCGCTCCAGTCCTTTTTGCAAGAGGATTTTCTCAGGAAATTTGCTGAGGAAGTGA 2049 0.4573 MSEDKRGAAAEGGETRFVANPDASNSTPTSTPLSCLRVLHPDHVAVGSPITRVPPYSAPPPSPKFWVDHDPSTLTHTHTNWAHDSSLISDFSKMNLLDQIQTDVDPCPYFNQPGTLPNPYDSGFNETENLPYHPHVNNARLFNEQGILPYHVNNSALFNGTENLPYHHHVNNAGLFTETGTLLPYHHHVNNAGLFDKGHTFDTPDDQGNLLYHHPVDQRRNQLQATSSGNYPIFRDRYMAPHSSGGFNSFVRLSSIAAMNCNANNPSHHYVSAKDKTEPPHFLPPKRVGGDPAAFRCDNSIILQGRDSRHCFENGYGSSHRRGPPRDEFCVSGSVSKNIFPGGPSGQNAGEFSLPMPLDYYSVPESQRCIYNLAKDQNGCRFLQRKVDEGSFEDMCVVFEGIIGSVVELMVDSFGNYLVQKLLDVCTDHQRLQIVLMLTNRPGQLVRISLNTHGTRVVQKLIETLDSDDQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSSQDNQFIFDASVKYCVEVATHQHGCCVLQRCIYYSMGKNRDRLISEICKHGLLLAQDPFGNYVVQYIIETDTPTAVAKMLGQFKGNYVHLSTQKFSSHVVEKCLRNVGDTRSRIVRELLAAPHFERLLQDPYANYVIQSALSFTKGLLHASLVDAIRNYKMLRSSPFCKRIFSGNLLRK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01643 682 CDD Pumilio 369 676 IPR033712 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 341 682 IPR033133 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 477 512 IPR001313 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 620 657 IPR001313 GO:0003723
Vian4g01643 682 MobiDBLite consensus disorder prediction 1 32 - -
Vian4g01643 682 SUPERFAMILY ARM repeat 365 675 IPR016024 -
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 549 584 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 622 657 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 513 548 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 440 475 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 365 400 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 549 584 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 477 512 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 585 619 IPR001313 GO:0003723
Vian4g01643 682 SMART pum_5 401 436 IPR001313 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 401 437 IPR001313 GO:0003723
Vian4g01643 682 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 207 675 - -
Vian4g01643 682 Gene3D - 358 678 IPR011989 -
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 482 512 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 556 577 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 589 622 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 517 551 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 406 435 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 444 474 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 370 400 IPR001313 GO:0003723
Vian4g01643 682 Pfam Pumilio-family RNA binding repeat 630 646 IPR001313 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 513 548 IPR001313 GO:0003723
Vian4g01643 682 ProSiteProfiles Pumilio RNA-binding repeat profile. 440 475 IPR001313 GO:0003723
Vian4g01643 682 FunFam Pumilio homolog 9 356 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01643 Vian-Chr4 32276871 32279717 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01643 - - pvu:PHAVU_009G030400g 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01643 4 32276871 32279717 Vian4g01643 4 32276871 32279717 ECH