Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01638 ATGGAAGGGAAAGCCAAGGACAAGGTGGACTTTGATTTTGGCTGCGGTTTGGTGGGAAGAATTTTCCACCTCAAAACCAATTACAGGACAAGAAAATCCTCTGTTCATTCACTGCCCATGAAGCCTTGCAACACTGCACAACAGAGAGACCAGGCCAAAAACGAGTTCAAACCCCATCTGAACCATGAACCAAAGGTTCCACGAGATACCTCCAACGGAATTACACTGAAAGGGGAGCAGAATCCTACCAGAAAGAGTACCTCTAGTCACCGGCCACCTTCTGCATGCCGAAACATTCCAAATGGGAGACCCTCAGACGCTGCAAGAACCTCAGTTCAACAAAACTATGACCCAAATGACGAGACTAAGCAACAGAAAGAGAACTCTGGTAATTCTCTGGAACTTGCAAGGATAAGCACAGGTGCTAGTCATCATCAGAACAACGACACCAAATCCCCAGCCAAAGATTTTGTGTTACCGATCACTGGGAATTTGCTTGTGAATAACAGTCCCAGAACTAGTGTTACAAAGAGCAAGGAGTTGAACTCCATGTCCGGTTCCTCTAGTTACAGTAGTAACGGCAACAAAAGTGTGATGGGGAATATCATGAGGAAGAACAGTGATGAACTTCAGCAATTTCGGAGTCCAAGGAACGGCAGAGCGGACCCTGAGGTGATGAAGTCCATGGGGAATGAAGCCTACAAGCTAGGAAGATTTGAAGAGGCTTTGGTTTTGTATGACAGAGCCATTGCTCTTGACTCCAATAAGGCAACGTATCACTGCAATAAGAGTGCAGCTTTGATCGGTTTGGGAAGGTTTCTCCAGGCAATTGTTGAGTGCGAGGAAGCTATCAGGTTGGAGCCTTCTTATGGCAGAGCCCACAACCGTTTGGCAACAATTTATTTCAGACTGGGAGAAGCAGAAAAGGCGCTGAATTGCAATGAAACAAGCCCATCTGTTGATTCCGTTCTCAGTTTACAAGCTCAGAATCTTCAAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGACTGGAAAGCTATATTGAAGGAAACACAGGCTGCAGTATCTTTAGGCGCTGATTCAGCTCCACAGGTCTATTGTTTACAAACTGAAGCCTTGCTGAAGCTCCAAAGACATCAAGAGGCATACGCTACCTTCGAGAAAATGCCAAAATTTGACCTTGATAGTTGTAAGAAAATATTCGGTCCAGCTCGTAGTGCTTACCTCATGATGATAGCTGCTCAAATTTACTTGGAAGCCGGCAGGTTTGAGGATGCTGTAACAACATCTGAGAAAGCAGCTAAACTAGATCCAATTAGCTTTGAGGTGAATGCAGTGGTGAGGAGAGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATGCGCTGTGTACAATGAAGGACTAGAGCATGATCCGTACAACTCAGTTCTGCTATGCAATAGGGCAGCATGTCGTTCCAAGCTAGGTCAATTTGAGAAAGCAATTGAAGATTGCAACGTGGCACTTATACTTCAGCCTAGCTATAGCAAGGCGAGGTTGAGGAGGGCAGATTGCAATGCCAAGTTGGAGAGATGGGAAGCTGCGATTCAAGACTACGAAATGCTATTAAGAGAAAAACCAGGGGATGAGGAGGTGGCCAGAGCTCTGTTTGAGACTCAGCTTCAACTCAAGATGCTGCGCGGAGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGTTTTTCATCTCAAGCAATGATCGCTTTAGACACTACGTAACATCCCCAGGGATGTCTGTGGTGCTGTTTTGCAACAAGGCAACCCACAAACAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCGTCAGTTAATTTTCTTAAGGTGGAGATTGAAGACCACCCCTATTTGGCAAAATCAGAAGATGTGAACTGCATCCCGGCCTTTAAAATATACAAGAATGGATCAAGGGTGAAAGAAATTCCAGGCAACAACCACGAGCTGTTAGAAAAATTAGTTAAATTATACAGCAGTTGA 2067 0.447 MEGKAKDKVDFDFGCGLVGRIFHLKTNYRTRKSSVHSLPMKPCNTAQQRDQAKNEFKPHLNHEPKVPRDTSNGITLKGEQNPTRKSTSSHRPPSACRNIPNGRPSDAARTSVQQNYDPNDETKQQKENSGNSLELARISTGASHHQNNDTKSPAKDFVLPITGNLLVNNSPRTSVTKSKELNSMSGSSSYSSNGNKSVMGNIMRKNSDELQQFRSPRNGRADPEVMKSMGNEAYKLGRFEEALVLYDRAIALDSNKATYHCNKSAALIGLGRFLQAIVECEEAIRLEPSYGRAHNRLATIYFRLGEAEKALNCNETSPSVDSVLSLQAQNLQNHLSKCTEARKVKDWKAILKETQAAVSLGADSAPQVYCLQTEALLKLQRHQEAYATFEKMPKFDLDSCKKIFGPARSAYLMMIAAQIYLEAGRFEDAVTTSEKAAKLDPISFEVNAVVRRARAVTSARMSGNLLFKASKFTEACAVYNEGLEHDPYNSVLLCNRAACRSKLGQFEKAIEDCNVALILQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEDVNCIPAFKIYKNGSRVKEIPGNNHELLEKLVKLYSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01638 688 Gene3D Glutaredoxin 585 687 - -
Vian4g01638 688 Pfam Tetratricopeptide repeat 414 441 IPR019734 GO:0005515
Vian4g01638 688 ProSiteProfiles TPR repeat profile. 410 443 IPR019734 GO:0005515
Vian4g01638 688 Pfam Tetratricopeptide repeat 479 511 - -
Vian4g01638 688 MobiDBLite consensus disorder prediction 104 132 - -
Vian4g01638 688 CDD TRX_family 597 682 - -
Vian4g01638 688 SUPERFAMILY TPR-like 461 572 IPR011990 GO:0005515
Vian4g01638 688 MobiDBLite consensus disorder prediction 31 51 - -
Vian4g01638 688 Pfam TPR repeat 230 265 - -
Vian4g01638 688 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Vian4g01638 688 MobiDBLite consensus disorder prediction 170 200 - -
Vian4g01638 688 SUPERFAMILY TPR-like 222 441 IPR011990 GO:0005515
Vian4g01638 688 Coils Coil 530 550 - -
Vian4g01638 688 MobiDBLite consensus disorder prediction 30 132 - -
Vian4g01638 688 SMART tpr_5 410 443 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 291 324 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 223 256 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 456 489 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 490 523 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 257 290 IPR019734 GO:0005515
Vian4g01638 688 SMART tpr_5 524 557 IPR019734 GO:0005515
Vian4g01638 688 MobiDBLite consensus disorder prediction 52 66 - -
Vian4g01638 688 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 684 IPR044534 -
Vian4g01638 688 SUPERFAMILY Thioredoxin-like 576 684 IPR036249 -
Vian4g01638 688 Pfam Thioredoxin 620 681 IPR013766 -
Vian4g01638 688 Gene3D Tetratricopeptide repeat domain 221 575 IPR011990 GO:0005515
Vian4g01638 688 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01638 Vian-Chr4 32187750 32190989 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01638 K09527 - gmx:100814381 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01638 4 32187750 32190989 Vian4g01638 4 32187750 32190989 ECH