Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01631 ATGTCATCAATATATTTGTTGTCTATGCAGCTGAGGAACTTGTTGTGGGCAACTTCGAAGCATGATGTCTACCTTATGCAAAACTACTCTGTGATGCACTGGTCCGCAGTATTACGAAGGGCTAAAGAAGTGCTTAACGTAGCCAAACCAATTGTTCCAAGTCTTAAGCGTACTGGATTTTTAGCGCAGCCAGTCTCTAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGTGAGCTTATATGCAAGAATTTGAAGAAGCCTGGAGTTCTATTTTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGACGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGAAGCAGAGAATTTTGCTTCCCTTGGTTGTTTCAACTATGATTGGTCTGTTAATAATATTTCGGTTAGCCCGGATGGGAAGTCGTTAGCTGTACTTGGGGATAGTACAGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGAAGCTTAAAAGGTCACTTGGACTACTCTTTTGCATCGGCGTGGCACCCAGATGGACGTATATTAGCTACTGGGAATCAGGACACAACTTGCAGGTTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCTGCAGACTTTGTCCATGTTTATGACTCTCATTCTGGTTATGTAGAAGGTCAAGAGATAGATCTATTTGGTGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGCATTGCTGACAGAACCTATGGTAGCTTGTTAGAGTTCGTCAGAAAGCGTTACAATTATTACCTAGACTCCATTTTTTAA 975 0.4256 MSSIYLLSMQLRNLLWATSKHDVYLMQNYSVMHWSAVLRRAKEVLNVAKPIVPSLKRTGFLAQPVSRVQISTMTVKENLMVAGGFHGELICKNLKKPGVLFCGKITTDDNAITNAVDVYRNPAGSLRVITANNDSQVRVFEAENFASLGCFNYDWSVNNISVSPDGKSLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHVYDSHSGYVEGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSIF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01631 324 FunFam WD-40 repeat family protein 105 321 - -
Vian4g01631 324 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 227 - -
Vian4g01631 324 SMART WD40_4 185 224 IPR001680 GO:0005515
Vian4g01631 324 SMART WD40_4 228 267 IPR001680 GO:0005515
Vian4g01631 324 SMART WD40_4 144 182 IPR001680 GO:0005515
Vian4g01631 324 Gene3D - 102 313 IPR015943 GO:0005515
Vian4g01631 324 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Vian4g01631 324 SUPERFAMILY WD40 repeat-like 64 304 IPR036322 GO:0005515
Vian4g01631 324 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 321 - -
Vian4g01631 324 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Vian4g01631 324 Pfam WD domain, G-beta repeat 187 224 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01631 Vian-Chr4 32040513 32041918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01631 170 304 Miscellaneous Gene Families AT5G08390 29.452 4.59e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01631 - - gmx:100775453 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01631 4 32040513 32041918 Vian4g01631 4 32040513 32041918 ECH