Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01619 ATGGCGATTAAGAATAATCAACACTTCAAGTGTTGGAGAAGCTCCCTTGTCGAACCAACCAGAGTGCTGCTAAAGTGTTATAAGTCTCGCAATATTGACGATAATGTTGGTGTGATTAATGCGGAAGACATTGTCGCTTCTATCCTGAACATGCCTCTACTACCCACAATCTTCATCGCCCCTACTAACAAGAAGGTTGGGGAAAAAAAGAAAAAATGCAAGAGGAAGCATGGGAGAAGTCTTCCTCCACCTGGTTCTTCTAAAGTAAAACAAAATAGACTTAGTATAAGGAGGGAACGAGCGGTTGACAGCGGGAGAGTGTGTCGACGAGCAGTGTCTATTGCGGGCCGGGTGTTCCGGCCCGCCCGGAACTCGTGGCGGCCCACCAGCCACGTCGTCGAATACGGTGTCGTCTTGGACTCCGATGGCAACTTCATCGACGAGGTCTTGGTGGTGCCGATGCTGGCTCCGAGGTCGTACACGCGCGAAGATGTGGTGGAGCTTCAGTGTCACGGGAGCGAAGTGTGTCTGCGCCGCGTGCTAAGGACTTGTTTGGAAGCCGGAGCAACGCTTGCGGAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGGCGTTTGGACCTCTCACAAGCCGAAAATGTTGCAAGATTAATCGCCGCCAAATCTGTGGCTGCTGCAGATGCTGCACTGCAAGGAATTCAGGGTGGCTTTTCTTCTCTTGTTCGATCTTTGCGGAGTCAGTGCATTGAGTTGCTTACTGAGATTGAAGCACGTTTAGACTTCGATGATGAGATGCCGCCTCTGGATTTGAATTTGGTTATGGATAAAATCCATGACATGTCACGAGACGTTGAGAATGCATTGGAGACAGCAAACTATGACAAGCTTCTGCAGTCTGGATTACAGATAGCTATTGTTGGCCGTCCGAATGTTGGGAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCCGGAACCACTCGTGATGTGGTTGAAGCAAGCATCAGTGTCAGTGGTATTCCTATCACCCTTCTTGATACAGCAGGCATCAGGGACACTGATGATATTGTGGAAAAGATTGGTGCGGCTTTCTTTCTTTTTCCTTTAAGCGTAGAACGGTCTGAAGCAGTTGCTAGGGGTGCTGATGTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTCGAAAGAATTCAATCTACCAAGGGATCAACTGGATCATCCACCGCAGCAATCCTTGTGGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATTTCAGAGTCATAAAATGTTCAGCAAACATGTGTTTACCTGTGCTGTTACCGGTCAAGGATTACAAGACTTAGAGAGGGCGGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACACTCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAAATAAGTGGAGAAAATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGATAG 1677 0.4705 MAIKNNQHFKCWRSSLVEPTRVLLKCYKSRNIDDNVGVINAEDIVASILNMPLLPTIFIAPTNKKVGEKKKKCKRKHGRSLPPPGSSKVKQNRLSIRRERAVDSGRVCRRAVSIAGRVFRPARNSWRPTSHVVEYGVVLDSDGNFIDEVLVVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAEPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALQGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLVMDKIHDMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASISVSGIPITLLDTAGIRDTDDIVEKIGAAFFLFPLSVERSEAVARGADVIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTAAILVVNKIDCKPCAETEWDKGFQSHKMFSKHVFTCAVTGQGLQDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLHSSIKEELPLDFWTIDLRDAALSLGQISGENISEEVLSNIFGKFCIG 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01619 558 Pfam MnmE helical domain 209 556 IPR025867 -
Vian4g01619 558 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 111 558 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vian4g01619 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 475 IPR027417 -
Vian4g01619 558 Gene3D tRNA modification GTPase MnmE domain 2 207 558 IPR027368 -
Vian4g01619 558 CDD TrmE_N 110 205 IPR018948 -
Vian4g01619 558 Gene3D - 302 487 IPR027417 -
Vian4g01619 558 NCBIfam small GTP-binding protein domain 302 453 IPR005225 GO:0005525
Vian4g01619 558 Pfam 50S ribosome-binding GTPase 303 433 IPR006073 GO:0005525
Vian4g01619 558 Gene3D Probable tRNA modification gtpase trme; domain 1 104 206 IPR027266 GO:0005515
Vian4g01619 558 MobiDBLite consensus disorder prediction 68 92 - -
Vian4g01619 558 PANTHER TRNA MODIFICATION GTPASE GTPBP3 110 558 - -
Vian4g01619 558 FunFam tRNA modification GTPase MnmE 302 487 - -
Vian4g01619 558 Hamap tRNA modification GTPase MnmE [mnmE]. 55 558 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vian4g01619 558 FunFam tRNA modification GTPase MnmE 99 206 - -
Vian4g01619 558 CDD trmE 299 480 IPR031168 -
Vian4g01619 558 Pfam GTP-binding protein TrmE N-terminus 109 206 IPR018948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01619 Vian-Chr4 31864037 31870888 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01619 K03650 - gmx:100779193 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01619 4 31864037 31870888 Vian4g01619 4 31864037 31870888 ECH