Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01608 ATGGGTGCATTTTTTAGTGTGGCGAGTACAAAATCTGACAAGAGGGAACGGGATGGAGTCTCTCCAAATGAGGCATGTAAGAGGCAAAGAATGTCTCCTACTGTTGATGAAGAGAGTCCAAGGCTCATTCCTAATCTCCCTGATGAGTTATCACTTCAGATCATTGCTAGACTTCCTAGAATTTGTTACTTAAATGTAAGGATGGTATCAAAGAAGTGGAAGTCAACTATCATGAGTTTAGAACTGTATAAATTGAGGAAAGAACTTGGGACAACTGAAGAGTGGCTGTATCTATTGATTAAGGTTGGAGAAAATAATCTTGTATGGCATGCTCTGGATCCTCGTTCTAAGATATGGCAGAGAGTGCCCAACATGCCCAATTTTGCCGATGAAGAAGAACATAGAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAGGGTATCAGAATTGCTGAAGTTATTAGGGGCTTTCTTGGACGGAAGGATGCATTTGATGAAATGCCCTATTGTGGTTGTGCAATTGGAGCTGTTGATGGGTGTCTCTATGTTCTTGGTGGATTTTCTAAGGCTTCAACTATGAGATGTGTGTGGCGATTTGATCCGATACAAAGTACATGGAGCAAGGTGACTCCTATGTCCACGGGTCGGGCGTACAGTAAGACAGGCATCTTAAATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCACGCTGGATTGGTTCCTCTCCAATCTGCTGAAGTTTTTGATCCCTCTACAGATACATGGTCGCATGTACCCAGTATGCCATTCTCTAGAGCTCAAGTCCTTCCCAGTGCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGGTTGACCTCATACATGGGAAGGTTGTGTGTTCCACAGAGTCTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGACACTAACTCATGGATAGAAATGCCTGCTGGAATGGGTGAAGGGTGGCCTGCGCGGCAGGCAGGAACCAAATTGAGTGTAGTAGTGGACGATGAATTATATGCTTTTGATCCTTCTAATGCTATGGATAGTGGAAGGATCAAGGTTTATGACCGAGGTGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTTCCCATATATGATTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCACGGGAAGCTCCATGTTATCACAAAAGATGCCAATCATGATATTGCTGTTCTGCAGGCAGGCCTGCGGAATAATTTGGGTTATTCACCATCACTCTCAACTCTGTCACAAAGTACATTGCATGAATCTCCAGAACTGGCTTCTGAATCAGATGCAGCAGTTGTTTGGAGGGTAGTTGCCTGCAGGGATTTTGGGCAGGCTGAACTAGTCAGTTGCCAAGTCATTGACATATAG 1431 0.4368 MGAFFSVASTKSDKRERDGVSPNEACKRQRMSPTVDEESPRLIPNLPDELSLQIIARLPRICYLNVRMVSKKWKSTIMSLELYKLRKELGTTEEWLYLLIKVGENNLVWHALDPRSKIWQRVPNMPNFADEEEHRKGSSRLWMWNMVEGIRIAEVIRGFLGRKDAFDEMPYCGCAIGAVDGCLYVLGGFSKASTMRCVWRFDPIQSTWSKVTPMSTGRAYSKTGILNNKLYVVGGVSQGHAGLVPLQSAEVFDPSTDTWSHVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPDTNSWIEMPAGMGEGWPARQAGTKLSVVVDDELYAFDPSNAMDSGRIKVYDRGEDAWKVVIGKVPIYDSADSESPYLLAGFHGKLHVITKDANHDIAVLQAGLRNNLGYSPSLSTLSQSTLHESPELASESDAAVVWRVVACRDFGQAELVSCQVIDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01608 476 Pfam F-box domain 44 83 IPR001810 GO:0005515
Vian4g01608 476 SUPERFAMILY Kelch motif 95 406 IPR015915 GO:0005515
Vian4g01608 476 PANTHER OS02G0202900 PROTEIN 27 475 IPR045887 -
Vian4g01608 476 SMART kelc_smart 182 228 IPR006652 GO:0005515
Vian4g01608 476 SMART kelc_smart 229 279 IPR006652 GO:0005515
Vian4g01608 476 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Vian4g01608 476 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Vian4g01608 476 MobiDBLite consensus disorder prediction 10 35 - -
Vian4g01608 476 SMART fbox_2 46 86 IPR001810 GO:0005515
Vian4g01608 476 Gene3D - 108 385 IPR015915 GO:0005515
Vian4g01608 476 CDD F-box_AtAFR-like 42 86 - -
Vian4g01608 476 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Vian4g01608 476 MobiDBLite consensus disorder prediction 1 40 - -
Vian4g01608 476 SUPERFAMILY F-box domain 39 103 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01608 Vian-Chr4 31652349 31653779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01608 36 264 Miscellaneous Gene Families AT4G33900 27.542 1.31e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01608 - - gmx:100806691 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01608 4 31652349 31653779 Vian4g01608 4 31652349 31653779 ECH