Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01596 ATGGAACCGGGTCTCTCTCTCAGGTTGAGCGCGTCGTCAACCGTGGCTCCTCTCGGCGACACCTCTGTGCCGTGGCGGTTTCGACACCTCAAAGAAGAAGAAGAGGAAGAAAACAACGGTGAGACTATTAACTTCATGGACCAGCGCGTGAAGAGGAAGATTGAAGGACATCAACAACCCTGTTTCCCTTCGAAGCGTGTGGCGATGGATTCTTCGGTGGGATGGTGGAACCAGCCACTGGGAGTGGCGGACCCCGAGATTTTCGAAATCATGGAGAAAGAAAAGCGAAGACAGTTCAAGGGAATAGAGTTGATTGCTTCGGAGAACTTCGTTTGCAGGGCAGTGATGGAAGCTTTAGGAAGCCATTTAAGCAATAAATATTCTGAGGGAATGCCTGGGGCCAAGTACTACACAGGAAATCAGTACATTGATGAGATTGAGCTTCTCTGTTGCCAGCGTGCTTTGTTGGCCTTTGACCTTCACCCTAACAATTGGGGTGTTAATGTTCAACCTTATTCTTGTACTTCTGCTAACTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATTATGGGTATGGATTCAGCCTCTGGGGGGCATTTGAGTCATGGTTATTATACGCAATGGGGTAAGAAGGTTTCTGCTGCTTCTATTTTCTTCGAGACTTTGCCTTATAAGGTTAATCCTCAGAGTGGTTACATAGACTACGATAAGCTCGAGGAGAAAGTAATAGATTTTAGGCCTAAGATACTTATCTGCGGTGGGAGTTCGTACCCCAGGGAATGGGATTATGCGAGGTTCAGGCAGGTTGCTGACAAATGTGGGGCAGTGTTGATGTGTGACATGGCGCATATCAGTGGCCTTGTGGCAGCTAAGGAAGTGGTTAGTCCATTTGATTACTGTGATATTGTTACTTCGACTACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGGGGGCCAAAACCAAGGAGGCAAGGTTTTGTGCTTAATCATGGAGACGATAGTAATTATGATTTTGAGGAGAAAATAAACTTTGCTTTGTACCCATCATTACAAGGAGGCCCTCATAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGCGTACATGCAGCAGGTGAAGAGAAATGCGCAGGCATTAGCATCTGCGCTGTTGAGAAGAAATTTCAGATTGGTGACAGGTGGGACCGACAATCATCTTTTGCTATGGGATCTGACAGCACTTGGTTTAATTGACAGAAACTATGAAAAGGTCTGCGAGGCGTGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCCATTTCTACTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGCTGTTTGGAAGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAGGGCGGCTCACATTACCAGCATGGTGCAAAGGGAACATGGGAAATCATGTAAAGATTTTCTCAAGGGTCTTGAGAATAATAAAGATATTTCTGAGCTCAGAAATCGGGTTGAGACATTCAGTTCCCAGTTTGCAATGCCAGGATTCGATACGTGA 1602 0.4526 MEPGLSLRLSASSTVAPLGDTSVPWRFRHLKEEEEEENNGETINFMDQRVKRKIEGHQQPCFPSKRVAMDSSVGWWNQPLGVADPEIFEIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIELLCCQRALLAFDLHPNNWGVNVQPYSCTSANFAVYTGILHPGDRIMGMDSASGGHLSHGYYTQWGKKVSAASIFFETLPYKVNPQSGYIDYDKLEEKVIDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKEVVSPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKPRRQGFVLNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALASALLRRNFRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISTGGVRIGTPAMTSRGCLEEDFETIADFLLRAAHITSMVQREHGKSCKDFLKGLENNKDISELRNRVETFSSQFAMPGFDT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01596 533 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 304 320 IPR019798 GO:0030170
Vian4g01596 533 Hamap Serine hydroxymethyltransferase [glyA]. 79 530 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian4g01596 533 SUPERFAMILY PLP-dependent transferases 75 530 IPR015424 -
Vian4g01596 533 Gene3D Aspartate Aminotransferase, domain 1 84 529 IPR015422 GO:0003824
Vian4g01596 533 CDD SHMT 84 522 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian4g01596 533 Gene3D - 109 388 IPR015421 GO:0003824
Vian4g01596 533 FunFam Serine hydroxymethyltransferase 109 327 - -
Vian4g01596 533 Pfam Serine hydroxymethyltransferase 82 480 IPR039429 -
Vian4g01596 533 PIRSF SHMT 61 533 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vian4g01596 533 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 71 532 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01596 Vian-Chr4 31536323 31541381 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01596 K00600 - gmx:100776419 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01596 4 31536323 31541381 Vian4g01596 4 31536323 31541381 ECH