Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01591 ATGGAAAACGCCGATGTATTCTTGGGCTTACAGGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCATTTTCGAACAATGCTCCTGATCCTGAGAGGGACAGTGCCTTGGTTCAAGCGTTTCTTGCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTCTGGGCTGGTTGCTCTGAAGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTGTTTGCTCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGACCAACTTTCCGAGAAGATGGCTTTGATTCAACAATTTGTTCGACCTGAAAATCTGGATATCAAGCCACCATTTCAGAATGAATCATCGTGGTTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCACCAAGGGACAAACTTGTGTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGCTTGCTTCCAAAGAGAATCCTCCGGGAGCTGATGAATTTCTTCCCGTGCTTATATATGTAACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAATCTCGATTGGTTGCTGAAGCAGCATATTATTTTACCAACATGCTGTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAACATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACACAAGATCCTGGTTCACCTTATCAAAATAATGGACAGCATCCGGTAGCAGAACCCACTAGGCACAAAATTAAAGCTTTGAATGATAACAAGGACTCTGCACTACGAACTCCGTCATCTGTTGCAAGATCAGAAGGCAAGAAAGTTGCTTTTGCAGATGAATTACTGATGACAAAAGTTCCATCCCTCTCTGATTTGGAGAATAAAGGGGCAAATATGATCCTGAAGGAGGACAAGTTGAATGAAGTTTTTGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGGGATCTAACAGTAAGTGATGTTGAAGACCTACTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCTAAAGGATTAGGTGTCTCTCCTACATCTCAGCCGCCAGCCGCCCAAAATAATTCTGACGACCGTGCTGAAACAACAATAGATTCTTCAGACGGTGGACCTCTAGATGAGAATAATAAATCAGAAGAATCTATTGATAAAACAGAGGATAGTTTGGATAAAGTTTCACCTATCGAGGAGCAAACAATTGAGCCTGGTTTGTCACAGGATGAGCCAGCTGCTCCTGAGGGTGATGCCCCGATAAAGTAA 1413 0.4246 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPERDSALVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALIQQFVRPENLDIKPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFESNMEFARAMLSGISVDTQDPGSPYQNNGQHPVAEPTRHKIKALNDNKDSALRTPSSVARSEGKKVAFADELLMTKVPSLSDLENKGANMILKEDKLNEVFGEFPYLFASVGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTSQPPAAQNNSDDRAETTIDSSDGGPLDENNKSEESIDKTEDSLDKVSPIEEQTIEPGLSQDEPAAPEGDAPIK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01591 470 SMART vps9_2 135 254 IPR003123 -
Vian4g01591 470 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Vian4g01591 470 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Vian4g01591 470 Gene3D VPS9 domain 99 265 IPR037191 -
Vian4g01591 470 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Vian4g01591 470 MobiDBLite consensus disorder prediction 393 411 - -
Vian4g01591 470 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Vian4g01591 470 MobiDBLite consensus disorder prediction 393 470 - -
Vian4g01591 470 MobiDBLite consensus disorder prediction 423 445 - -
Vian4g01591 470 Gene3D - 17 97 - -
Vian4g01591 470 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 387 IPR045046 GO:0005085|GO:0016192
Vian4g01591 470 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01591 Vian-Chr4 31482873 31489290 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01591 K20131 - gmx:100810958 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01591 4 31482873 31489290 Vian4g01591 4 31482873 31489290 ECH