Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01581 ATGCATCCTTTCTGCTGCGTGTCCGCCATTTCCGACCAGGCATCGCCAGTGAAACCCTCCTTCACGGACTTCCCTATGCCGCCTCTCCCTGCCGCCGCCGCCGTGAGATCCGATTCGGCTCCGCGGCACAGCCACAAGCACAGCCACAGCCACAGCCACAGCGGGAGTCAGCGGGAGCAGCCTGTGGACGTGAAGATCAACGACCTCGTTGGCAACGGAATCTCCGGAGTACTGTACAAATGGGTGAATTACGGCAAAGGATGGCGACCGCGATGGTTTGTACTCCAAGACGGCGTTCTCTCCTACTATAAGATTCACGGACCAGATAAGATCGTCGTGAATCCCGAAACCGAGAAAGGCTCCATGGTTATCGGTGAAGAATCCATGCGCAGGATCACTCGCAACCGCAATTCCTATCCCTGCCAGCACGTGCGAAAGCCGTTCGGGGAAATCCATCTCAAGGTTTCGACTATTCGCGAGAGCAAATCGGATGACAAGCGCTTCTCGGTCTTCACGGGAACGAAGAGGCTCCACCTGAGGGCGGATACGCATGAAGATCGCGTGTCGTGGACGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCTCCGTTGGACAATGTAACTGTTTCGACGGAGAAACTGAGACTTCGGCTAATGGAAGAGGGAGTGAGCGAGGGGACTATTCAGGACAGTGAGCAAATCATGAGGACTGAGTTTGCGGCGCTGCAAAGCCAGCTTGTGCTGCTTAAGCAGAAGCACTCAATTCTCATCGACACTCTGCGCCAATTGGAGACAGAAAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCTCAAGATTAGCGCAAGAAAAATTTAGTGAAGGAACAGGAAGTGAATCTGAAGATGACAATGATCGAAATGATGCTGCTGAGGAAGAAACTGACGATGATGACAATGCCTTTTTTGATACTCGTGATATTCTGTCGTCCAGTTCTTTTAAAAGTAATGGGTCTGATTATAGAATGTCATCCTTCTCTTCAGATGATGAAGGGTTCTATGCATTTGAATCAGAGGATGACATAGATCCTTCGATTAGATATGTTGGAACCAATTACCCTCGTGTTAAACGGCGTAAGAAATTGCCAGACCCTGTAGAAAAAGAGAAAGGAGTCAGTCTGTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTTTCCTCCCTACAAAAGTGTTTTGAGGAAATGGAGTACTCATATCTCTTGGACCAAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGGATTCTCTATGTTGCGGCTTTTGCTGTATCTGGCTATGCTGCAACAGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAGGCTCACTATCCGGATAAAGGCCTTCGGTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATTGTAGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGGCGATCAATTCAGCTTGACCCTGTTGGTATTTTGACTTTGGAATTTGATGATGGGGAAGTTTTCCAGTGGAGTAAGGTTACTACATCAATATACAATCTCATATTGGGAAAACTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATCATTCAAGATAGGAACGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGTATTACGTTAATGGAGACTACACCGGGAAAGGGAAAGGTCATGAATCTTTGTCAGATGCCCGTTTGCTCTGGAAGCGAAGCAAGGCTCCCAAGATTCCCACTAGATATAACTTCACTCGCTTTGCCATCACACTAAACGAACTGACCCCTGGTTTGAAGGAGAAGTTGCCACCTACAGATTCAAGGTTAAGGCCAGACCAAAGGTATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTACGGCTAGAGCAGCGGCAGCGCCAGGCTCGGAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGCGAAGGATAAGGCGAGCGGGACATACCGTTACGTAGGAGGATACTGGGAGTCCCGACAAAGAGGAATCTGGGACTCCTGCCCTGACATCTTTGGCCAAATTCCTTCTTCCGATCATATTTCTGACGAAGGTCAAATTACATTTTAG 2367 0.4698 MHPFCCVSAISDQASPVKPSFTDFPMPPLPAAAAVRSDSAPRHSHKHSHSHSHSGSQREQPVDVKINDLVGNGISGVLYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSMVIGEESMRRITRNRNSYPCQHVRKPFGEIHLKVSTIRESKSDDKRFSVFTGTKRLHLRADTHEDRVSWTEALQAVKDMFPRMSNSELMAPLDNVTVSTEKLRLRLMEEGVSEGTIQDSEQIMRTEFAALQSQLVLLKQKHSILIDTLRQLETEKVDLENTVVDESQRQWNDEEASSRLAQEKFSEGTGSESEDDNDRNDAAEEETDDDDNAFFDTRDILSSSSFKSNGSDYRMSSFSSDDEGFYAFESEDDIDPSIRYVGTNYPRVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILYVAAFAVSGYAATEGRICKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMYYVNGDYTGKGKGHESLSDARLLWKRSKAPKIPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYVGGYWESRQRGIWDSCPDIFGQIPSSDHISDEGQITF 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01581 788 SUPERFAMILY Oxysterol-binding protein-like 400 776 IPR037239 -
Vian4g01581 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 73 759 IPR000648 GO:0008289
Vian4g01581 788 Gene3D - 72 201 IPR011993 -
Vian4g01581 788 SMART PH_update 72 201 IPR001849 -
Vian4g01581 788 FunFam Oxysterol-binding protein-related protein 2A 702 773 - -
Vian4g01581 788 SUPERFAMILY PH domain-like 74 205 - -
Vian4g01581 788 FunFam oxysterol-binding protein-related protein 1D isoform X1 491 663 - -
Vian4g01581 788 Coils Coil 262 289 - -
Vian4g01581 788 MobiDBLite consensus disorder prediction 32 62 - -
Vian4g01581 788 MobiDBLite consensus disorder prediction 288 334 - -
Vian4g01581 788 MobiDBLite consensus disorder prediction 317 333 - -
Vian4g01581 788 Pfam Oxysterol-binding protein 405 759 IPR000648 GO:0008289
Vian4g01581 788 Gene3D - 702 763 - -
Vian4g01581 788 Pfam Pleckstrin homology domain 79 195 - -
Vian4g01581 788 CDD PH_ORP_plant 74 206 - -
Vian4g01581 788 Gene3D - 491 671 - -
Vian4g01581 788 ProSiteProfiles PH domain profile. 71 199 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01581 Vian-Chr4 31308181 31313913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01581 K20456 - gmx:100137077 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01581 4 31308181 31313913 Vian4g01581 4 31308181 31313913 ECH