Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01543 ATGGCTCAAACCATGTTGCTCATGTCTAGTGTCTCTAGCAGCCACTCCCTGGGTTTGAAGAAAGAACTTTTCCAACAATTGAGGCCTAAATTCTCTCAACTCTCGTTCAACCCTCTTCCATCATCATCTTCTTTCTCTTCTTCACCTCGTACATTCACAACTCTCGCCCTCTTCAAATCAAAGACCAAGGCCCCTCCTGCCAAGACCAAGGTTACAAAGCCAAAGGTTGAAGATGGTGTCTTTGGCACTTCTGGAGGGTTTGGTTTTACTAAGCAGAACGAGCTCTTTGTGGGTCGTGTTGCCATGCTTGGTTTTGCGGCATCATTGTTGGGTGAAGCAGTAACTGGGAAAGGAATTCTTTCACAATTGAATCTGGAAACAGGAATTCCTATTTATGAAGCAGAGCCCCTTCTTCTGTTTTTCATCCTTTTCACGCTGCTGGGAGCTATTGGAGGTTTAGGTGACCGTGGCAAATTTGTCGATGACGAACCCAACACCGGAGGTGTCATTCCTGCAGGAAAAGGCTTCAGAGAAGCACTTGGTCTCGGTTCAGGTCCTTTGTTTGGATTCACGAAAGCTAACGAGCTATTTGTGGGAAGATTGGCTCAATTGGGATTCGTTTTCTCTTTGATTGGAGAGATTATTACTGGGAAGGGAGCACTCGCCCAGCTCAACATCGAGACTGGAGTACCGATCAACGAAATCGAACCCCTTGTGTTGTTCAACGTTCTTTTCTTCTTCATCGCAGCTTTGAATCCTGGAACTGGCAAATTCGTTACTGACGAGGAGGATGATTAG 798 0.4599 MAQTMLLMSSVSSSHSLGLKKELFQQLRPKFSQLSFNPLPSSSSFSSSPRTFTTLALFKSKTKAPPAKTKVTKPKVEDGVFGTSGGFGFTKQNELFVGRVAMLGFAASLLGEAVTGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGGLGDRGKFVDDEPNTGGVIPAGKGFREALGLGSGPLFGFTKANELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEEDD 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01543 265 FunFam Photosystem II 22 kDa protein, chloroplastic 50 133 - -
Vian4g01543 265 Pfam Chlorophyll A-B binding protein 79 208 IPR022796 -
Vian4g01543 265 SUPERFAMILY Chlorophyll a-b binding protein 71 244 - -
Vian4g01543 265 Gene3D Chlorophyll a/b binding protein domain 50 131 - -
Vian4g01543 265 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 70 127 - -
Vian4g01543 265 Gene3D Chlorophyll a/b binding protein domain 132 236 - -
Vian4g01543 265 FunFam Photosystem II 22 kDa protein, chloroplastic 134 235 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01543 K03542 - gmx:100807355 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01543 4 30625517 30626860 Vian4g01543 4 30625517 30626860 ECH