Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01523 ATGGCGCGTAGGGTTTCCATTTGCTCCTTCTTCTTCGTCTTCGCACTTTCTCTTATCGCCTCTCAGATCTCTGCGGAGGAGTCCTCTGAGACTAAGGAATTCGTACTCACACTGGATAACTCCAACTTTCACGACACTATCAGCAAGCACGATTTCATCGTTATCGAGTTCTACGCTCCATGGTGTGGCCACTGCAAGAAGCTTGCTCCTGAGTATGAGAAAGCTGCGTCTATCTTGAGCAGTCATGATCCTCCGATTGTTTTGGCTAAAGTTGACGCCAATGAAGAGAAGAACAAAGCTCTTGCATCGGAATATGATGTTAAGGGATACCCCACACTTAAGATTGTGAGGAATGGGGGAAAGAATGTTCAGGAGTACAAAGGTCCCCGTGAAGCCGATGGCATCGTTGATTATTTGAAGAGACAGAGTGGTCCTGCTTCAACTGAAATTAAATCTGCCGATGATGCTACAGCTTTTATTGGTGAAAATAAAGTTGTTGTTGTTGGAGTTTTCCCGAAATTTTCTGGCGAGGAGTTTGATAACTTTACTGCCTTAGCAGAGAAGTTGCGTGCTGATTATGACTTTGGTCACACCCTGAATGCTAAACACCTTCCAAGAGGTGAATCATCAGTCGCTGGCCCTGTAATTAGGTTATTCAAGCCGTTCGATGAACTTTTTGTTGACTCCAAGGATTTCCAAGTGGATACTCTAGAGAAATTTGTTGAGGAGTCCAGTATCCCTGTCGTTACTATCTTTAACAATGATCCTAACAATCATCCTTTCGTTGTCAAGTTCTTCAACAGCCCCAATGCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAAGTGCTGAATCTTTCAAATCAAAATACCGTGAAGCTGCTGAGCAATTTAAACAACAGGGTGTAAGCTTTCTGGTTGGAGATGTAGAGTCTAGTCAAGGAGCTTTCCAGTACTTTGGACTGAAGGAAGAACAAGTACCTTTAATTATCATTCAACATAATGACGGGAAGAAATATTTTAAGCCCAATTTGGAAGCCGAACACATTCCAACTTGGTTGAAGGCATACAAGGAGGGTAACATTGCACCATATGTGAAATCTGAACCTGTTCCAGAAACTAACAATGAACCAGTTAAAGTGGTAGTTGGGGAAAGTCTCCAGGACATCGTTTTCAAGTCTGGGAAGAACGTTCTGCTGGAGTTTTACGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCTATATTGGACGAAGTTGCTATCTCATATCAAAATGATGCTAATGTTATCATTGCTAAACTGGATGCAACTGCCAACGATATCCCAGGTGATACCTTTGATGTCCAAGGTTATCCAACCCTGTACTTCAGGTCATCAAGTGGAAATCTATTACAATACGACGGTGGCAGGACCAAGAATGACATCATAGAATTCATTGAAAAGAACCGGGACAAACCTGCCCAGCAAGAACAAGGAACAGATAAACCTGCTCATGCTGAACAAGTAAAAGATGAGCAAGAAACAGGAAAAGATGAGCTTTGA 1545 0.4272 MARRVSICSFFFVFALSLIASQISAEESSETKEFVLTLDNSNFHDTISKHDFIVIEFYAPWCGHCKKLAPEYEKAASILSSHDPPIVLAKVDANEEKNKALASEYDVKGYPTLKIVRNGGKNVQEYKGPREADGIVDYLKRQSGPASTEIKSADDATAFIGENKVVVVGVFPKFSGEEFDNFTALAEKLRADYDFGHTLNAKHLPRGESSVAGPVIRLFKPFDELFVDSKDFQVDTLEKFVEESSIPVVTIFNNDPNNHPFVVKFFNSPNAKAMLFINFTAESAESFKSKYREAAEQFKQQGVSFLVGDVESSQGAFQYFGLKEEQVPLIIIQHNDGKKYFKPNLEAEHIPTWLKAYKEGNIAPYVKSEPVPETNNEPVKVVVGESLQDIVFKSGKNVLLEFYAPWCGHCKQLAPILDEVAISYQNDANVIIAKLDATANDIPGDTFDVQGYPTLYFRSSSGNLLQYDGGRTKNDIIEFIEKNRDKPAQQEQGTDKPAHAEQVKDEQETGKDEL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01523 514 Pfam Thioredoxin 35 140 IPR013766 -
Vian4g01523 514 Pfam Thioredoxin 379 482 IPR013766 -
Vian4g01523 514 SUPERFAMILY Thioredoxin-like 245 376 IPR036249 -
Vian4g01523 514 NCBIfam protein disulfide-isomerase 35 514 IPR005792 GO:0003756
Vian4g01523 514 ProSitePatterns Thioredoxin family active site. 399 417 IPR017937 -
Vian4g01523 514 NCBIfam protein disulfide-isomerase domain 39 142 IPR005788 GO:0003756
Vian4g01523 514 NCBIfam protein disulfide-isomerase domain 383 483 IPR005788 GO:0003756
Vian4g01523 514 Gene3D Glutaredoxin 24 143 - -
Vian4g01523 514 MobiDBLite consensus disorder prediction 481 514 - -
Vian4g01523 514 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Vian4g01523 514 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Vian4g01523 514 CDD PDI_a_family 36 139 - -
Vian4g01523 514 FunFam Protein disulfide-isomerase 23 142 - -
Vian4g01523 514 PRINTS Thioredoxin family signature 53 61 - -
Vian4g01523 514 PRINTS Thioredoxin family signature 61 70 - -
Vian4g01523 514 PRINTS Thioredoxin family signature 106 117 - -
Vian4g01523 514 FunFam Protein disulfide-isomerase 374 487 - -
Vian4g01523 514 Pfam Thioredoxin-like domain 171 355 - -
Vian4g01523 514 SUPERFAMILY Thioredoxin-like 346 484 IPR036249 -
Vian4g01523 514 CDD PDI_a_PDI_a'_C 378 480 - -
Vian4g01523 514 ProSiteProfiles Thioredoxin domain profile. 357 485 IPR013766 -
Vian4g01523 514 CDD PDI_b_family 147 243 - -
Vian4g01523 514 Gene3D Glutaredoxin 248 372 - -
Vian4g01523 514 FunFam Protein disulfide-isomerase 244 373 - -
Vian4g01523 514 PANTHER PROTEIN DISULFIDE ISOMERASE 11 511 - -
Vian4g01523 514 Gene3D Glutaredoxin 373 487 - -
Vian4g01523 514 Gene3D Glutaredoxin 144 247 - -
Vian4g01523 514 ProSiteProfiles Thioredoxin domain profile. 14 144 IPR013766 -
Vian4g01523 514 CDD PDI_b'_family 262 358 - -
Vian4g01523 514 SUPERFAMILY Thioredoxin-like 148 247 IPR036249 -
Vian4g01523 514 FunFam Protein disulfide-isomerase 143 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01523 Vian-Chr4 30439177 30442538 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01523 K09580 - gmx:100170705 920.228