Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01518 ATGAAATTCCGTTACTCCATCCTGCTCCTATCAATCCTCCTCGCAGTCTCGGCTGCGGCCGAGCCTACTCCCTCCGCCGCCTACAACCGCGTGCTGTTTCCCGACCGGAGATGTCAGAGGGCGATGTCGGAGAACAGCACAAGGCTCGGCGCGCCACCGGTGGCAGCGGAGTGCGAGGTGTGGAGCGAGGCTTGTTCGGACGCGGTGCTGAAAGTAGCGCGGCAGTCGGAGACAGCGGAGTGGCTGAGAGGTATTCGGCGGAAGATCCACGCAAATCCTGAGTTGGCGTTTGAGGAAATCGAGACGAGTCGCTTGGTGAGAGAGGAGTTGGATCTGATGGAAGTTAGCTATCGGTATCCCCTCGCTAAGACCGGTATTCGAGCTTGGATCGGCACTGGTGGTCCTCCTTTTGTTGCCATCAGAGCTGACATGGACGCACTTCCCATTCAGGAAGCTGTGGAGTGGGAGCACAGGTCTAAAGTTGCCGGCAAAATGCATGCTTGTGGGCACGACGCACACGTTGCCATGCTTCTTGGCGCTGCCAAGATCTTGAAAACTCGAGAGCATCTATTAAAGGGAACTGTAGTTTTGATATTCCAGCCAGCTGAAGAAGCTGGAAATGGAGCAAAACGAATGATGCAAGATGGTGCTTTGGAGGACGTGGAAGCAATATTTGCAGCTCATGTATCCCATGAACATCCAACTGGAATAATCGGGTCAAGGCCTGGGCCCCTCCTTGCCGGTTGTGGGTTTTTCAGAGCCGTCATTAGGGGCAAAAAGGGTTTTGCTGCCGATCCCCACCGTTCCGTTGATCCTGTTTTGGCTGCTTCGGCTTCTGTTATCAGCTTACAGGGTATTGTCTCCCGCGAATCAAATCCACTCGATTCTCAGGTTGTTTCTGTAACTTCGTTTAATGGAGGCAACAATCTTGACATGATACCAGACACAGTGGTTCTCGGTGGGACTTTCAGAGCGTTCTCTAACACCAGCTTTTACCAGTTACTTGAAAGAATAGAACAGGTGATTGTTGAACAGGCAAGCGTGTACAGATGCTGGGCAGAAGTGGATTTCTTTGAAAAGGAGTACACAATTTATCCTCCAACAGTAAATGATGAGAGAATGTATGAGCATGTGAAGAAGGTATCGGTTGATTTGCTGGGTCAGAAGAATTTCAGGGTAGTTCCACCTATGATGGGTGCTGAAGATTTCTCCTTCTACTCCGAGGTGGTTCCCTCAGCTTTCTTCTACATAGGGATAAGGAATGAAACATTGGGGTCTACTCATACGGGACACTCTCCCTATTTCATGATTGATGAAGACGTTCTACCAATAGGTGCTGCTACTCATGCCACTATTGCAGAGAGGTATCTCATTCAACATGGCTAA 1386 0.5036 MKFRYSILLLSILLAVSAAAEPTPSAAYNRVLFPDRRCQRAMSENSTRLGAPPVAAECEVWSEACSDAVLKVARQSETAEWLRGIRRKIHANPELAFEEIETSRLVREELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEHRSKVAGKMHACGHDAHVAMLLGAAKILKTREHLLKGTVVLIFQPAEEAGNGAKRMMQDGALEDVEAIFAAHVSHEHPTGIIGSRPGPLLAGCGFFRAVIRGKKGFAADPHRSVDPVLAASASVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLERIEQVIVEQASVYRCWAEVDFFEKEYTIYPPTVNDERMYEHVKKVSVDLLGQKNFRVVPPMMGAEDFSFYSEVVPSAFFYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAATHATIAERYLIQHG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01518 461 Gene3D Zn peptidases 84 442 - -
Vian4g01518 461 CDD M20_IAA_Hyd 82 457 IPR044757 GO:0009850|GO:0016787
Vian4g01518 461 Pfam Peptidase family M20/M25/M40 139 454 IPR002933 GO:0016787
Vian4g01518 461 PANTHER PEPTIDASE M20 FAMILY MEMBER 62 460 IPR017439 GO:0016787
Vian4g01518 461 Gene3D - 247 365 - -
Vian4g01518 461 SUPERFAMILY Bacterial exopeptidase dimerisation domain 248 357 IPR036264 -
Vian4g01518 461 NCBIfam amidohydrolase 83 445 IPR017439 GO:0016787
Vian4g01518 461 FunFam N-acetyldiaminopimelate deacetylase 247 365 - -
Vian4g01518 461 SUPERFAMILY Zn-dependent exopeptidases 75 459 - -
Vian4g01518 461 PIRSF Amidohydrol_AmhX 70 460 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01518 Vian-Chr4 30353851 30361269 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01518 K21604 - gmx:100785666 821.617