Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01514 ATGCAGCCGTTGCATCTGAGACTCATCAACGTCTCTCTTGCAGCTATGACCACGAAGAAGAGAAAAAGATCCCCGAAACTGATCCCACACACTCCCTCAACGCCCCCGACTCCCCAAACCCAGGCCCGTCATTCTTTCAACACCGCAAAAGCCCGGGCCTGGGCCCCTCTCAACTTGATCCAGGCCGAACTCTCTCTGCCACTCACCTTTCCCACGGGCCAAACCTTCCGCTGGAAAAACACTGCCCCTCTAGAATACACCGGCGTCGTTGGGCCCCACCTCGTAACCCTCAAACACCTCCAAAACGGCGACGTTTGCTACTGCCTCCACTCCCACTCTCACCCCGAAAAAGCCGAAACCGCCTTGCTAGATTTCCTTAACGCCGCCGTTTCTCTCTCCGGCTTATGGAAGGCGTTTTCCGCTTCCGATGCGAGGTTCGCGGCGCTAGCGCGCCACTTGAGCGGTGCGAGGGTGCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCCAATAACAACATTGCACGAATCACGAAGATGGTTGACCACGTGTCGTCCCTTGGAGTGCACGTGGGAGACGTTGGAGGGTTTCAGTTTCACGTTTTCCCTTCTTTGGAGCAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCGGGTTTCGGTTACAGAGCTAAATATATAATTGGAACGGTTAATGCTTTGCGATCAAAACCTGGTGGAGGGGAAGAGTGGCTTCGTTCTCTGCGTAAGTTGGATCTTCCAGATGTTATATCTGCACTTTCTACGTTACCTGGTGTGGGCCCTAAAGTGGCTGCTTGCATTGCTCTCTTCTCGCTTGATCAACACCATGCCGTTCCTGTTGACACTCACGTTTGGCGGATTGCCACCAAGTATCTCTTACCTGAGCTTGCAGGTTCGCAGTTGACACCAAAGCTCTGTAATCGTGTTGCAGAGGCATTTGTTACCAAGTACGGTAAATATGCTGGGTGGGCGCAGACTCTATTGTTCATAGCTGAATTACCTTCACAGAAGGCCATCATACCTTCACATTTGTGGACTATCAAACAACGGAATCCTGCAAAGGTAGAAGATGGCGAAGAAAAAGTTGGTGTGACATGCTGCTGTCAAGAATTCATTAGAGTTGAGACTGGTGCTTCCTCTGTCATAAATGAAATCCTGGATAAATAG 1203 0.5104 MQPLHLRLINVSLAAMTTKKRKRSPKLIPHTPSTPPTPQTQARHSFNTAKARAWAPLNLIQAELSLPLTFPTGQTFRWKNTAPLEYTGVVGPHLVTLKHLQNGDVCYCLHSHSHPEKAETALLDFLNAAVSLSGLWKAFSASDARFAALARHLSGARVLRQDPFECLIQFLCSSNNNIARITKMVDHVSSLGVHVGDVGGFQFHVFPSLEQLSSVSEQQLRDAGFGYRAKYIIGTVNALRSKPGGGEEWLRSLRKLDLPDVISALSTLPGVGPKVAACIALFSLDQHHAVPVDTHVWRIATKYLLPELAGSQLTPKLCNRVAEAFVTKYGKYAGWAQTLLFIAELPSQKAIIPSHLWTIKQRNPAKVEDGEEKVGVTCCCQEFIRVETGASSVINEILDK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01514 400 FunFam N-glycosylase/DNA lyase 162 286 - -
Vian4g01514 400 SUPERFAMILY DNA-glycosylase 162 343 IPR011257 GO:0003824|GO:0006281
Vian4g01514 400 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 38 360 - -
Vian4g01514 400 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 59 167 IPR012904 GO:0003684|GO:0006289|GO:0008534
Vian4g01514 400 Pfam HhH-GPD superfamily base excision DNA repair protein 168 303 IPR003265 GO:0006284
Vian4g01514 400 Gene3D - 135 345 IPR023170 -
Vian4g01514 400 SMART endo3end 172 345 IPR003265 GO:0006284
Vian4g01514 400 Gene3D - 40 126 - -
Vian4g01514 400 FunFam N-glycosylase/DNA lyase OGG1 283 345 - -
Vian4g01514 400 SUPERFAMILY TATA-box binding protein-like 51 161 - -
Vian4g01514 400 Gene3D Hypothetical protein; domain 2 162 286 - -
Vian4g01514 400 CDD ENDO3c 164 342 IPR003265 GO:0006284
Vian4g01514 400 MobiDBLite consensus disorder prediction 19 42 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01514 K03660 - gmx:100789749 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01514 4 30268580 30270739 Vian4g01514 4 30268580 30270739 ECH