Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01497 ATGCACAGCACAAGTGAGGCGATTCAGGAGGTTGGAGAAGCGAGCGAGAGAGTGAGCAAGGTTATGATGACGTGTCCCACACTGGCACTTGACACTGCTCTTAATCAAACTGGAGTTAAAGTTCCCCCTGATTTAGTTGAAGATGTTCTCAAACGATTTGAGAATGCGGGCATGTCAGCATTTCAGTTCTTTGAGTGGGCAGAGAAGCAGAGAGGGTACTCGCACAGCATAAGGGCATATCACTTGATGATTGAATCTCTGGCTAAGATTAGACAGTACCAGATCGTGTGGGACCTTGTTAATGCCATGAGGAAAAAGGGCATGCTAAATGTGGAGACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTCGACGAGGCTGTTTACACCTTTAATGTCATGGATAAGTACGATGTGGTCCCAAATATTGCTGCATTTAATGGTTTGTTAAGTGCTTTGTGCAAGTCCAACAATGTGAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGGGTCGATTTGAACCAGACGCGAAAACTTATAGCATTTTGCTGGAGGGGTGGGGAAAAGCTCCCAATCTTCCCCGGGCAAGGGAGGTTTTTGGAGAGATGGTTCGTGCTGGGTGTGATCCTGATGTTGTTACTTATGGTATAATGGTTGATGTTCTTTGCAAAGCAGGGAGGGTCGATGAAGCAGTTGAGGTTGTGAAGGAAATGGATGAGAGCAATTGCAGGCCTACATCTTTCATTTATAGTGTCCTGGTTCATACTTATGGAGTGGAGCACCGAATTGAAGATGCTATTGATACATTCCAGGAGATGGAGAGGAAGGGAATCAAGGCTGATGTTGTGGTTTATAATGCCTTGATTGGTGCCTTTTGTAAAGTAAATAAGTTTAAAAATGTGCACAGGGTCTTGCAGGAGATGGAGATCAATGGCGTTGCGCCGAATTCAAGGACCTGCAATGTTATCATAAGCAGTATGATTTGTCAGGGACAGACTGACAGAGCTTTTAGAGTTTTCCGCCGGATGATCAAGTTATGTGAACCGGATGCTGACACTTACACAATGATGATAAAAATGTTTTGTGAGAAAAATGATCTGGAAATGGCTCTGCGAATATGGAAGTTTATGAAGTCAAAACAATTTGTTCCAAGCATGCACACCTTTTCTGCCCTTGTCAAGGGGCTGTGTGAAAAAGGTGATGCCGCAAAAGCTTGTGTTGTGCTTGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACGTTTGGGAGGTTGAGACAGTTGCTTTTAAAGGAAGGGAGAGAAGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTACATGATTAA 1383 0.4338 MHSTSEAIQEVGEASERVSKVMMTCPTLALDTALNQTGVKVPPDLVEDVLKRFENAGMSAFQFFEWAEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNIAAFNGLLSALCKSNNVRKAQEIFDAMKGRFEPDAKTYSILLEGWGKAPNLPRAREVFGEMVRAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDESNCRPTSFIYSVLVHTYGVEHRIEDAIDTFQEMERKGIKADVVVYNALIGAFCKVNKFKNVHRVLQEMEINGVAPNSRTCNVIISSMICQGQTDRAFRVFRRMIKLCEPDADTYTMMIKMFCEKNDLEMALRIWKFMKSKQFVPSMHTFSALVKGLCEKGDAAKACVVLEEMIEKGIRPSRITFGRLRQLLLKEGREDVLKFLHEKMNLLVKEPLHD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01497 460 Gene3D Tetratricopeptide repeat domain 244 330 IPR011990 GO:0005515
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Vian4g01497 460 Pfam PPR repeat 113 140 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Vian4g01497 460 Pfam Pentatricopeptide repeat domain 273 328 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Vian4g01497 460 Pfam PPR repeat family 144 189 IPR002885 -
Vian4g01497 460 Pfam PPR repeat family 352 400 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Vian4g01497 460 Gene3D Tetratricopeptide repeat domain 331 458 IPR011990 GO:0005515
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Vian4g01497 460 Pfam PPR repeat 210 241 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 148 174 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 322 348 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 286 319 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 252 285 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 182 215 IPR002885 -
Vian4g01497 460 NCBIfam pentatricopeptide repeat 356 388 IPR002885 -
Vian4g01497 460 SUPERFAMILY TPR-like 75 377 IPR011990 GO:0005515
Vian4g01497 460 Gene3D Tetratricopeptide repeat domain 173 243 IPR011990 GO:0005515
Vian4g01497 460 Gene3D Tetratricopeptide repeat domain 29 172 IPR011990 GO:0005515
Vian4g01497 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vian4g01497 460 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 55 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01497 Vian-Chr4 30050000 30051382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01497 73 448 Glycosyltransferase AT1G05670 24.256 2.70e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01497 - - gmx:100790096 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01497 4 30050000 30051382 Vian4g01497 4 30050000 30051382 ECH