Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01495 ATGGAGCTGCCGGAGTGCCCGGTGTGCCTTCAATCCTTCGACGACCGCGACGCAATTCCTCGGGTCTTGTCATGTGGACACTCCGTTTGCGAAGCTTGTCTCGCGGAGCTTCCGCAACGGTACCCGAATACTATTCGGTGCCCCGCTTGCACCCAACTCGTGAAGTATCCTTCTCAACAAGGTCCTTCTTCTCTTCCCAAAAACATCGACCTCCTCAGAATCTCGCTCCAACACTCCCCTTCTTCTTCTAGTCATTCCCACAAACACAACCAACGGTCCACCTTCAATTCTTGTAACGATCACTCTTCGTTCTGGTCCCCTGAGTTCTATGATGTATGGAAGAATTGGATTCTTCCGCTCGACGCTGTTTTAACTGATGACCATTGTCTTGGTCGGTTCAGTTCGTCCAAGGGTAGGGTTTGTTTCGGAGTTAACCGATGCGTGAGTCTCGCTCCGATTGTTTGTTTCTCTCCTGGGGATGACTCTAAGTTTAGGTTTAGCTATGTTGCATGGGTGATTAAGTGTTTGGAGGGGATGAGCGAGGCTGCGAGAGAGGAGTTAGCATGGATTCTTGAAGCTTCCGTGAGACAGAGGAGGGTGTGTGGGGTTTTTGGGTTGTGGAGTGAAGGGGTGGAGGGACCTCTGTATATGGTGTGTGAGAGGCAAAGTGGTAATCTTTTAGACAAGTTTGGTGAATTGGGAAATGGGTTTGTTGGTGGGAATGAGGGTGGTTTGGAGTTGGACAGTGGTGGGATTTTTTATTTTTTAATGATTGGAAGGGGTATATGTGAAGCTGTGCTTTCTTTGCATTTGGAAGGTTTAGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTCGGTGGGATTTGTGTTGATTTGAATGAGGTATTGGGGATGGGAAGGCGGTTGCATGCTGTTTCCGGTAAACATGAGAAAGAAGCAATGTCTAAAGATTGCTTGGAAAATGAGATTTTTGTAAGTCCTGAGGTTTTGTATGAGTTGTTGTACATGAGGAGATCTGCTCGAGATAGTGGCCATTTGAGATATCCAATTGGGTATGGCTCAGATGTATGGTCATTGGCCCGTGTACTGCTATGGCTTCTTATTGGAAATGTGCTGCCTCGGAATACCTTGGAAATGAATGAAGAGAGTGATGGTGATAGCACAGCTAGTTATGTGTGTTGCGTGGAGAAAGTTGGTTCTGTGTTGGAAGACAAACTAGGCTCTGAGTATCTGTCACTGGGGAAGATTCTTTGCAAATGTTTGGACGTCAATCCAGTAAACCGTCCAGATGTGGTAGATGTAAGGAACTGCATTCAGGATATGTTAGTCAAACCTCAATTTGAATTTCTGGGCAACTTAGAGGTCACAATAAGTAAGGACAGTACAGGTCGCTGTTTGGTTCTAGGGGAGCTATCTCTGTTGCCTAAGGAATGGTCTGACGAACCAAGCGAGCATGAGTTGCGGGAGAAACAAATTGATGGTCATCCAAATTTTGTTCAAGATGGCCAAGACAAGTCTGACGAGTACTCTGCTGCTGGTTTATCTGGGGGCTTAACTGAACTCAAAGATCTGCGAAGCCATCTTGATTGTGTCAGTGGATTGGCTGTTGGAGGCGGGTATTTATTCAGCTCCTCATTTGACAAAACTGTTCGCGTATGGTCCTTGCAGGACCTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATCTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATTTGGGGAATTGCTGCTCCTCTTAGGCAAGATCCCTTAAGGAAATGGAATGAGAACAAGGATTGGCGTTTTAGTGGTATACACTCCTTGGCTGTTTCCAAAAATCATTCTATTTACACTGGAAGCGGAGATAGAACAATCAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGTCATAGATCCGTAGTTTCCACACTTGCTGTTTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTAAATGACCACTGTCCATTGACAGTTCTGGGGGAAGATACGCTTGCAGATATGAGGTCTATCATGGCTATTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAATGGATGCATAAAGGTCTGGAGGAATGATGTGTTCATGAATTCCAAAACATTGCATAATGGGTCCATTTTTGCAATGAGTATGCAGGGAAAATGTCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGACGAGTTTGAACTGGATGTCAAACCATATGGATCCATTCCAAACAGTTCTGTTGTTACAGCTATATTATACAGCCAGGGAAAACTGTACATCGGATATGCTGACAAGTCTATTAAGGTTTATCAGTAA 2451 0.4447 MELPECPVCLQSFDDRDAIPRVLSCGHSVCEACLAELPQRYPNTIRCPACTQLVKYPSQQGPSSLPKNIDLLRISLQHSPSSSSHSHKHNQRSTFNSCNDHSSFWSPEFYDVWKNWILPLDAVLTDDHCLGRFSSSKGRVCFGVNRCVSLAPIVCFSPGDDSKFRFSYVAWVIKCLEGMSEAAREELAWILEASVRQRRVCGVFGLWSEGVEGPLYMVCERQSGNLLDKFGELGNGFVGGNEGGLELDSGGIFYFLMIGRGICEAVLSLHLEGLVAGCLGLSCFSFDELGGICVDLNEVLGMGRRLHAVSGKHEKEAMSKDCLENEIFVSPEVLYELLYMRRSARDSGHLRYPIGYGSDVWSLARVLLWLLIGNVLPRNTLEMNEESDGDSTASYVCCVEKVGSVLEDKLGSEYLSLGKILCKCLDVNPVNRPDVVDVRNCIQDMLVKPQFEFLGNLEVTISKDSTGRCLVLGELSLLPKEWSDEPSEHELREKQIDGHPNFVQDGQDKSDEYSAAGLSGGLTELKDLRSHLDCVSGLAVGGGYLFSSSFDKTVRVWSLQDLSHLHTFRGHENKVMALVYLDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWNENKDWRFSGIHSLAVSKNHSIYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHCPLTVLGEDTLADMRSIMAITVDRHLLVAAHENGCIKVWRNDVFMNSKTLHNGSIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKPYGSIPNSSVVTAILYSQGKLYIGYADKSIKVYQ 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01495 816 CDD RING-HC_TRIM32_C-VII 4 53 - -
Vian4g01495 816 SMART ring_2 6 50 IPR001841 -
Vian4g01495 816 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Vian4g01495 816 Gene3D - 612 816 IPR015943 GO:0005515
Vian4g01495 816 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vian4g01495 816 PRINTS G protein beta WD-40 repeat signature 545 559 IPR020472 -
Vian4g01495 816 PRINTS G protein beta WD-40 repeat signature 676 690 IPR020472 -
Vian4g01495 816 PRINTS G protein beta WD-40 repeat signature 636 650 IPR020472 -
Vian4g01495 816 Gene3D Transferase(Phosphotransferase) domain 1 300 448 - -
Vian4g01495 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 567 IPR001680 GO:0005515
Vian4g01495 816 MobiDBLite consensus disorder prediction 483 504 - -
Vian4g01495 816 Gene3D - 515 611 IPR015943 GO:0005515
Vian4g01495 816 MobiDBLite consensus disorder prediction 483 499 - -
Vian4g01495 816 Pfam WD domain, G-beta repeat 525 558 IPR001680 GO:0005515
Vian4g01495 816 Pfam WD domain, G-beta repeat 656 689 IPR001680 GO:0005515
Vian4g01495 816 PANTHER - 1 816 IPR044715 -
Vian4g01495 816 SUPERFAMILY WD40 repeat-like 523 816 IPR036322 GO:0005515
Vian4g01495 816 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 691 - -
Vian4g01495 816 SMART WD40_4 561 601 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 521 558 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 607 649 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 780 816 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 692 733 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 652 689 IPR001680 GO:0005515
Vian4g01495 816 SMART WD40_4 734 771 IPR001680 GO:0005515
Vian4g01495 816 SUPERFAMILY Protein kinase-like (PK-like) 196 450 IPR011009 -
Vian4g01495 816 SUPERFAMILY RING/U-box 5 59 - -
Vian4g01495 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 691 IPR001680 GO:0005515
Vian4g01495 816 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Vian4g01495 816 Pfam RING-type zinc-finger 6 48 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01495 Vian-Chr4 29996043 30000440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01495 543 761 Acyl Lipid Metabolism Gene Families AT3G18860 29.386 2.73e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01495 - K03070 gmx:100793437 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01495 4 29996043 30000440 Vian4g01495 4 29996043 30000440 ECH