Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01464 ATGGCTAACAACGCTGCTGCCTGTGCTGAGAGAGCAACTAGTGACATGCTCATTGGCCCGGACTGGGCTATCAACATAGAGTTGTGTGATATCATTAATATGGACCCGGGGCAAGCAAAGGATGCATTGAAGATACTCAAAAAGCGTTTGGGCAGTAAAAATCCAAAAATACAGCTTCTGGCACTTTTTGTATTGGAGACCCTCAGTAAAAACTGTGGTGAAAGTGTATTTCAGCAGATAATCGAGCGGGATATCTTACATGAAATGGTTAAGATAGTGAAGAAGAAGCCAGATTTAAATGTGAGGGAAAAGATACTGATTTTAATTGATACATGGCAAGAAGCTTTTGGGGGGCCAACTGGGGTTTATCCTCAATATCATGCAGCGTATAATGAATTGAAGTCTGCGGGAGTTGAGTTTCCACCTCGAGAGGAGAATAGTGTACCATTCTTCACTCCTCCTCAAACTCAGCCAATTGTTCATGCTGCTGAAGAATTTGATGACGCTACTATTCAGGCTTCTCTCCAGTCAGATGCATCTGGCCTTAGTTTAACAGAGATTCAAAATGCTGAAGGACTAGCTGATGTGTTGATGGAAATGCTTAGTGCCTTGAATCCTAAAGACCATGAGTGCAAAACTGCCATGGCAAGTTTTCATTATTCATTTGTTTCTTATTACTCTGGACAAATATGTCAGGGTGTGAAGGAGGAAGTGATTGTTGACCTTGTTGACCAGTGCCGTTCATACCAAAAGCGGGTCATGCTTCTTGTAAACAGTACTACGGATGAGCAGCTTTTAGGTCAGGGATTGGCACTGAATGACAGCCTTCAACGTGTGCTCCGTAGACATGATGATATTGTGAAAGGAACTTCTGATTCAGGTGCTAGAGAAGCAGAAACTTCGGTCTTGCCACTTGTAAATGTAAACCACGAAGATGATGAAACAGAAGAGGATTTCGCTCAACTAGCTCATAGGTCATCACGTGATGCTCATGCACAGAATAGGAAACCAATCTATGACAAGGCAGAACCAGGGAGGATAAACCCAGTTCTTCCCCCACCACCAGCATCAAAGAAGCCTGTCTACTCTGGCAGTGGTGTGGTTGACTATCTCAGTGGTGATACATACAAGACAGAAGGATCTCAAAACTCAGAACCCACTGCATTTGCAGCTCCCGTTCACTCTAGCCCTAATCCAACGTCACCAGTGTCTGCTTCTCGTCCCCATACCGTGAGTACCTCATCACCAATTTTGAGCAGCCAGCCTGTGTATGATGAACAGCCTTCTTCTGTGGACAAATCTTCTGAGAGGCTGCCTCCAGCTCCCTGGGACACTCAATCTACTGGCATCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAATTTTTTGAGCAACAAGGTGCATCCCATTCAAGTAGTGGATCCAATTCCTCTTATGACAGCTTGGTGGGACAAACTCAAAATCTCTCGATGAATTCATCCACCCCAACCAAAGAACAGAAGCCAGAAGATGCCCTTTTCAAAGATCTTGTTGATTTTGCAAAATCCAAAACCTCATCATCTTCCAAACCCAATAGGTCATATTGA 1593 0.4401 MANNAAACAERATSDMLIGPDWAINIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLLALFVLETLSKNCGESVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPTGVYPQYHAAYNELKSAGVEFPPREENSVPFFTPPQTQPIVHAAEEFDDATIQASLQSDASGLSLTEIQNAEGLADVLMEMLSALNPKDHECKTAMASFHYSFVSYYSGQICQGVKEEVIVDLVDQCRSYQKRVMLLVNSTTDEQLLGQGLALNDSLQRVLRRHDDIVKGTSDSGAREAETSVLPLVNVNHEDDETEEDFAQLAHRSSRDAHAQNRKPIYDKAEPGRINPVLPPPPASKKPVYSGSGVVDYLSGDTYKTEGSQNSEPTAFAAPVHSSPNPTSPVSASRPHTVSTSSPILSSQPVYDEQPSSVDKSSERLPPAPWDTQSTGIIPPPPSKYNQRQQFFEQQGASHSSSGSNSSYDSLVGQTQNLSMNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNRSY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01464 530 MobiDBLite consensus disorder prediction 516 530 - -
Vian4g01464 530 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Vian4g01464 530 ProSiteProfiles GAT domain profile. 199 288 IPR004152 GO:0035091|GO:0043130
Vian4g01464 530 MobiDBLite consensus disorder prediction 317 342 - -
Vian4g01464 530 Pfam GAT domain 194 289 IPR004152 GO:0035091|GO:0043130
Vian4g01464 530 Gene3D - 2 158 IPR008942 -
Vian4g01464 530 SUPERFAMILY GAT-like domain 145 289 - -
Vian4g01464 530 Pfam VHS domain 9 135 IPR002014 GO:0035091|GO:0043130
Vian4g01464 530 PIRSF TOM1 1 214 IPR014645 -
Vian4g01464 530 PIRSF TOM1 230 529 IPR014645 -
Vian4g01464 530 MobiDBLite consensus disorder prediction 450 502 - -
Vian4g01464 530 MobiDBLite consensus disorder prediction 309 530 - -
Vian4g01464 530 SUPERFAMILY ENTH/VHS domain 4 142 IPR008942 -
Vian4g01464 530 CDD VHS 10 135 - -
Vian4g01464 530 Gene3D - 175 296 IPR038425 -
Vian4g01464 530 FunFam TOM1-like protein 2 4 151 - -
Vian4g01464 530 CDD GAT_GGA-like_plant 186 286 - -
Vian4g01464 530 MobiDBLite consensus disorder prediction 375 429 - -
Vian4g01464 530 PANTHER TOM1-LIKE PROTEIN 1 526 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vian4g01464 530 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01464 Vian-Chr4 29386563 29393677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01464 - - gmx:100795713 862.833