Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01457 ATGGCTAAAGTTTGTTGGCCATATTTTGATCCTGAGTATGAGAACTTCAGCAATAGAATGAACCCACCAAGGGTCTCTGTGGACAATACCAGTTGTCATGACTGTACACTGATCAAGGTTGATAGTGTCAACAAACCAGGAATTCTGCTGGAAGTGGTGCAAATCTTGACCGACCTTGACTTCATAATTACAAAAGCTTACATATCTTCTGACGGTGGTTGGTTTATGGATGTATTTCATGTCACGGATCAGCAAGGAAGAAAGATAACGGACAACAAAACCATCGACTTCATTGAAAAGGCTCTAGGACCAAAGAGCCAGAGCACAGAAGGGGTGAAATTTTGGCCAAGCAAAAGGGTTGGAGTGCATTCTGTCGGTGATCATACAGCCATTGAACTGATTGGCAGAGACCGCCCTGGTCTCTTGTCTGAGATTTCAGCTGTTCTTGCCAACCTCCATTTTAATGTTTTTGCAGCAGAAGTGTGGACTCATAACAGGCGAATTGCCTGCGTTCTTTATGTCAATGACGCTACAAACCGAGCTGTGGACGAGCCAAACAGATTATCTCTAATGGAGGAGCAGCTCAACAACATCTTACGAGGATGTGATGGTGAGAAAGTTGCTAGGACTAGTTTCTCCATGGGTTTCACCCACATGGATCGGCGGCTGCACCAAATGTTGTTTGCTGATCGGGATTATGAAAGTTATAGAGTAGCACGAGACGTTAATTGTCCTCTCTCTTTCAGGCCTAAAATCACAATAGAACGTTGTGAGGAGAAAGGGTACTCAGTTGTCACAGTCAAGTGCAAGGATCGGGCAAAACTCATGTTTGACATTGTTTGCACTCTTACTGATATGCAATATGTTGTTTTCCATGCCACAGTTTCATCAGATGGCCCTTATGCATCCCAGGAGTATTTTATTCGACATATGGATGGATGCACCCTTGACACTGAAGGAGAGAAAGAAAGGGTCATCCAATGCATTGAAGCTGGTATTCGAAGAAGAGTAAGCGAGGGTGTTAGCCTTGAGCTGTGTGCAAAGGATAGAGTTGGGTTGCTGTCTGAAGTAACAAGGATTCTACGAGAGAATGGGTTGACAGTGTGTAGGGCAGGTGTATCAACGAGAGGGGAGCAAGCATTGAACGTGTTCTACGTAAGGGATGCATCAGGAAACCCAGTGGACATGAAAACTATGGAAGCACTTGGCAAAGAAATAGGTAAGACAATGATGGTTGATGTGAAGAGAGTGCCAACCAATGCTAAAGTACCAGAGACCCGACGATGGGCTAAAACCAGTTTCTTCTTTGGTAACTTGTTCGAAAGGTTCTTGACCTCATAA 1341 0.443 MAKVCWPYFDPEYENFSNRMNPPRVSVDNTSCHDCTLIKVDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGRKITDNKTIDFIEKALGPKSQSTEGVKFWPSKRVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATNRAVDEPNRLSLMEEQLNNILRGCDGEKVARTSFSMGFTHMDRRLHQMLFADRDYESYRVARDVNCPLSFRPKITIERCEEKGYSVVTVKCKDRAKLMFDIVCTLTDMQYVVFHATVSSDGPYASQEYFIRHMDGCTLDTEGEKERVIQCIEAGIRRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGVSTRGEQALNVFYVRDASGNPVDMKTMEALGKEIGKTMMVDVKRVPTNAKVPETRRWAKTSFFFGNLFERFLTS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01457 446 CDD ACT_ACR_3 262 336 - -
Vian4g01457 446 ProSiteProfiles ACT domain profile. 342 419 IPR002912 -
Vian4g01457 446 SUPERFAMILY ACT-like 338 406 IPR045865 -
Vian4g01457 446 SUPERFAMILY ACT-like 125 201 IPR045865 -
Vian4g01457 446 ProSiteProfiles ACT domain profile. 130 209 IPR002912 -
Vian4g01457 446 Gene3D - 337 420 - -
Vian4g01457 446 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 10 415 IPR040217 -
Vian4g01457 446 Gene3D - 128 202 - -
Vian4g01457 446 CDD ACT_ACR_1 35 105 - -
Vian4g01457 446 CDD ACT_ACR_4 340 411 - -
Vian4g01457 446 SUPERFAMILY ACT-like 32 106 IPR045865 -
Vian4g01457 446 ProSiteProfiles ACT domain profile. 37 114 IPR002912 -
Vian4g01457 446 Pfam ACT domain 130 199 IPR002912 -
Vian4g01457 446 Pfam ACT domain 37 86 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01457 Vian-Chr4 29248386 29252692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01457 - - gmx:100789173 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01457 4 29248386 29252692 Vian4g01457 4 29248386 29252692 ECH