LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01456	ATGGTTGGCAAGGATAATCTGAGAGCTGAGGACTTGAACTTGTGTTTTGAGAGACTTATGATGGTGGCTGGGAGTGGGAACAGTGAGAAAGGGGTGAACTTGAAGGTTGGGGTGATTACCGAGTGGAAGGATATTCCTGTGGAACTTTTGATGCAAATTTTGTCCCTTGTGGATGATCAGACAGTGATCACCGCTTCTGGAGTTTGTCGTGGCTGGAGAGATGCTATCTACTTTGGCCTTGCTCGTTTATCACTATCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCAATTATTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTAGAGGATAAAGCTGTTGAGACTATTGCAGAGTGCTGTCATGAATTGCAGATTCTGGACCTCAGCAAAAGCTTCAAGCTAACTGATCGTTCACTTTATGCTATTGCATTAGGTTGTCGCGATCTCACAAAACTCAACATCAGTGGGTGTTCAGCATTTAGTGACGGTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTAAAAGTTCTAAATCTTTGTGGATGTGTTAGAGCTGCATCTGATACTGCATTGCAGGCCATTGGACAGTACTGCAATCAGCTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGTGATGTTGGAGTGACTACTTTAGCATATGGGTGCCCTGATCTTAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCTAACAGATGCCCACATCTGAGGTCTCTTGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCTTTGGCACACAGCAAGGTGAATAACAGGATATCTGTGAAAGGAGGAAATGATGAGGATGGGTTAAGGACATTGAACATAAGCCAATGCACTGCACTCACCCCATCTGCGGTTCAAGCGGTTTGTGACTCATTCCCATCACTCCACACATGCTCAGGGAGGCACTCACTCATAATGAGTGGCTGCCTCAACTTGACCTCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGTATTCACCCATTTCCCTCATCCAGCTCATTAA	1110	0.4459	MVGKDNLRAEDLNLCFERLMMVAGSGNSEKGVNLKVGVITEWKDIPVELLMQILSLVDDQTVITASGVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSIIPKFTKLQTLILRQDKPQLEDKAVETIAECCHELQILDLSKSFKLTDRSLYAIALGCRDLTKLNISGCSAFSDGALAYLASFCRKLKVLNLCGCVRAASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTTLAYGCPDLRIVDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNNRISVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRVFTHFPHPAH	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01456	369	Pfam	F-box-like	43	76	IPR001810	GO:0005515
	Vian4g01456	369	Gene3D	Ribonuclease Inhibitor	80	358	IPR032675	-
	Vian4g01456	369	SUPERFAMILY	RNI-like	79	350	-	-
	Vian4g01456	369	FunFam	F-box protein SKP2A isoform A	81	297	-	-
	Vian4g01456	369	SMART	LRR_CC_2	103	129	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	156	181	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	235	260	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	300	325	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	182	208	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	261	286	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	130	155	IPR006553	-
	Vian4g01456	369	SMART	LRR_CC_2	209	234	IPR006553	-
	Vian4g01456	369	SUPERFAMILY	F-box domain	42	78	IPR036047	GO:0005515
	Vian4g01456	369	CDD	F-box_AtSKP2-like	41	88	-	-
	Vian4g01456	369	FunFam	F-box protein SKP2A isoform A	39	80	-	-
	Vian4g01456	369	PANTHER	UNCHARACTERIZED	69	333	-	-
	Vian4g01456	369	Gene3D	-	39	79	-	-
	Vian4g01456	369	Pfam	Leucine Rich repeat	261	284	IPR001611	GO:0005515
	Vian4g01456	369	Pfam	Leucine Rich repeat	209	232	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01456	Vian-Chr4	29238926	29241513	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01456	K03875		-	gmx:100818928	718.768

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian4g01456	4	29238926	29241513	Vian4g01456	4	29238926	29241513	ECH