Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01440 ATGGTGGTAACTTCCTCCGCGCGTGATTATATCAACCGCATCTTGCAAGACATCTCCGGCATGAAGGTTCTAATCCTTGATTCTCAAACGGTTGGTGTTGTGAGTGTTGTGTATTCGCAGTCAGAGCTTCTCCAGAAAGAAGTGTTTTTGGTTGAATTGATAGATTCTATTTCCAAGTCGAGCGAATCGATGTCGCATCTCAAGGCCGTTTACTTCCTTCGACCTACATCAGAGAATATCCAGTTTTTGCGCCGCCAGCTACCTAATCCTAGATTTGGAGAGTATCACCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACATTCTTGCTGATTCTGATGAACAGGAAGTTGTCCAGCAGGTTCAGGAGTTCTATGCAGATTTTGTTGCAATTGATCCTTATCATTTCACTTTCCATGTGCCTTCACATTACATATATATGCTCCCAGCTGTGGTAGATCCTTCAACAGTGCAGCGCTTTTGTGACCGAGTTGTTGAAGGGCTTGCAGCTGTTTTTTTGGCACTAAAACGCAGACCAGTAATTAGGTATCAAAGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCAACTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCTCTGTTGTTAGTTATTGACAGGAGGGAGGATCCTGTAACCCCATTGCTAAATCAATGGACTTATCAGGCTATGGTTCATGAATTAATAGGAATCCAAGACAATAAAGTGGACTTAAAATCCATTGGTAAATTTCCAAAAGATCAGGAGGAGGTTGTGTTGTCATCGGAACAAGATCCCTTTTTCAAGGCTAACATGTATGAGAATTTTGGAGATATAGAGGACATGGCCAAATTTGTTGATAATTATCCTGAGTACAGAAAAATGCATGGAAATGTGACAAAGCATGTGACTTTAGTAACCGAAATGAGCAAGATAGTTGATGAGCGAAAGCTTATGTCAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGACAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGTGTATCAGATCTGGATCGACTACGTTTAGTCATGTTGTATGCTTTACGATATGAGAAAGATAGCCCTGTTCAATTAATGCAGCTCTTCAATAAACTGGCTTCCAGATCTGCCAAGTACAAACCTGGGTTACACAAGAAAGTTACTGATATTGATATCTTTATTATGGTGCAACAGCTTGTCCAGTTTCTTCTGAAGCAAGCGGGTGTTGACAAGAGAATGGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGAGGTTTGAAGGGTGTTGAGAATGTTTACACCCAGCACCAGCCACTTCTGTTTCAAATCATGGAAAACATTGTCAAGGGGAGGTTAAGAGATGTGGACTACCCATTTGTTGGAAATCACTATCAACAGGGAAGGCCACAGGATGTAATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCTCGGTCTGTTGCTTTACAAAATGCCAACAATACCGGTATTCGGTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAAAGACTTGGAAGAAGCTCAAAGGGTAGCTCGCTCTAGCACCACTGTTGTTTGA 1683 0.4106 MVVTSSARDYINRILQDISGMKVLILDSQTVGVVSVVYSQSELLQKEVFLVELIDSISKSSESMSHLKAVYFLRPTSENIQFLRRQLPNPRFGEYHLFFSNILKDTQIHILADSDEQEVVQQVQEFYADFVAIDPYHFTFHVPSHYIYMLPAVVDPSTVQRFCDRVVEGLAAVFLALKRRPVIRYQRTSDIAKRIAQEATKLMYQEESGLFDFRRMEVSPLLLVIDRREDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIGKFPKDQEEVVLSSEQDPFFKANMYENFGDIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVDERKLMSVSQTEQELACNGGQGAAFEAVTNLLNNESVSDLDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLHKKVTDIDIFIMVQQLVQFLLKQAGVDKRMGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMENIVKGRLRDVDYPFVGNHYQQGRPQDVIIFIVGGTTYEESRSVALQNANNTGIRFILGGSSVLNSKRFLKDLEEAQRVARSSTTVV 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01440 560 Gene3D - 329 466 - -
Vian4g01440 560 SUPERFAMILY Sec1/munc18-like (SM) proteins 5 548 IPR036045 -
Vian4g01440 560 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 328 IPR043127 -
Vian4g01440 560 Gene3D - 2 128 IPR043154 -
Vian4g01440 560 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 14 546 IPR001619 GO:0016192
Vian4g01440 560 Gene3D - 155 547 IPR027482 -
Vian4g01440 560 Pfam Sec1 family 291 545 IPR001619 GO:0016192
Vian4g01440 560 Pfam Sec1 family 22 292 IPR001619 GO:0016192
Vian4g01440 560 FunFam Vacuolar sorting protein 2 128 - -
Vian4g01440 560 PIRSF VPS45_Sec1 291 557 IPR001619 GO:0016192
Vian4g01440 560 PIRSF VPS45_Sec1 1 293 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01440 Vian-Chr4 28937992 28945986 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01440 K12479 - gmx:100782786 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01440 4 28937992 28945986 Vian4g01440 4 28937992 28945986 ECH