Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01432 ATGCCACCAGCAGTGTCATCTACTTTTGAGTCAGAGAGAGATCCTGTGATATATGTGCACACAGTTTCAGAGGCTGGTCGCCTTCTTCCTTCAGCTAGCCGCTGGAACTCTATAGCAGTTGACATTAAACTTGCTCCTGATTCTTCCACTGCTTATGAATCTATCCCTTCCCAATATCCAAAATCTGTTGATTACGATCTTGTTATCACTAACAGGAAGCATTTTCATTCTGGGCATTATCCTAGGAACAGTCCAGTGAAATTTCGGGGAGATTCAGGATTACAAGATGGGAATTCGGCTAATACTGATCTTACTGGTGGATTTTATGATTCTGGCAACAACATCAAGTTTACCTTCACCACAGCTTACACCATGACCTTGTTGAGTTGGACTGTCATGGAATATCAAAGTAAATATGCTGATATTGATGAACTTGATCATGTTAGGGACATCATTAGATGGGGCAGTGACTACCTGCTCAAGGTTGGAAGTACCATTAGTATCAACAATGAACCTAATGAGTTGAGTTGCTGGCAACGACCGGAAGATATGAAATATGAGAGATCAGTTTCAATTTGCGATGGCTCTGCTACAGATTTAGTTGGTGAAATTGTGGCAGCATTATCTGCAGCATCGATGGTATTCAAGGAAGACAGAGATTACTCAAAGAGACTTAAGGATGCAGCAGAAAGGGTCTTTGGGGCAATACCTACCACACAAGGGACTCACACCATGGTTGATGCATGTGGAAAACAAGCAACAATGCTTTATAACTCAACCAGCTACCAAGATGAGTTAGCTTGGGGGGCAACATGGTTATTTCTTGCTACTACAAACACTAATTACCTTGCAATTGCAACTGAAACTTTTTTTTCAGCCAAGAGTAGTGAATCAAGCGTTGACAAAGGGGTTGTTTACTGGAATAATAAGCTCAATGCTGTGGAGGTTTTGCTAACCGGTATTCGATACTTCCGTGATCCTGGCTTCCCATATGAGGATGTTCTGATACTTTCATCTAACTCAACCGATGCACTCATGTGTTCTTATCTATTCAATAAATACTTTAGCAGGACACCTGGTGGGTTGATTATCCTGAAACCTGATAATGAACCACTGCTCCAGTTTGCTGCTACAGCGTCTTTTCTCAGTAAATTATACAGCGATTACCTTGATCATCTGAAAATGTCTAGTGCAAGTTGCAAGACTGATACATTCTCCGTGAAAATGCTTCGTGACTTTGCCACTTCTCAGGCAGTTAACTACATCTTGGGGCAGAACCCTTTGCAAATGAGTTATTTAGTGGGCTATGGTGACAGGTATCCTGTCCAAGTTCATCACAGAAGTGCATCAATCCCTTGGAACAACCAACCTTACAATTGTGACGATGGTAAGAGATGGCTAAACTCTAAAGATCCAAATCCACAAGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACGCTAATGATAATTTCCTGGACCAAAGGACCAACCAAAAGTTCACTGAACCGAGCATAGCCAGCAACGCAGGCTTAGTTGCAGCATTGATTGCACTTCAAGATCCTCCTTATAATTCACGTGACCTAAAAAGCACATTGTGGGGATGGACTTGA 1611 0.4227 MPPAVSSTFESERDPVIYVHTVSEAGRLLPSASRWNSIAVDIKLAPDSSTAYESIPSQYPKSVDYDLVITNRKHFHSGHYPRNSPVKFRGDSGLQDGNSANTDLTGGFYDSGNNIKFTFTTAYTMTLLSWTVMEYQSKYADIDELDHVRDIIRWGSDYLLKVGSTISINNEPNELSCWQRPEDMKYERSVSICDGSATDLVGEIVAALSAASMVFKEDRDYSKRLKDAAERVFGAIPTTQGTHTMVDACGKQATMLYNSTSYQDELAWGATWLFLATTNTNYLAIATETFFSAKSSESSVDKGVVYWNNKLNAVEVLLTGIRYFRDPGFPYEDVLILSSNSTDALMCSYLFNKYFSRTPGGLIILKPDNEPLLQFAATASFLSKLYSDYLDHLKMSSASCKTDTFSVKMLRDFATSQAVNYILGQNPLQMSYLVGYGDRYPVQVHHRSASIPWNNQPYNCDDGKRWLNSKDPNPQVLLGAMVGGPDANDNFLDQRTNQKFTEPSIASNAGLVAALIALQDPPYNSRDLKSTLWGWT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01432 536 PANTHER ENDO-1,4-BETA-GLUCANASE 76 519 - -
Vian4g01432 536 Pfam Glycosyl hydrolase family 9 77 515 IPR001701 GO:0004553|GO:0005975
Vian4g01432 536 SUPERFAMILY Six-hairpin glycosidases 69 520 IPR008928 GO:0005975
Vian4g01432 536 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 421 447 IPR018221 -
Vian4g01432 536 Gene3D - 63 521 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01432 Vian-Chr4 28829559 28831922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01432 53 518 Glycoside Hydrolase AT5G49720 43.574 2.12e-127 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01432 K01179 - gmx:100805472 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01432 4 28829559 28831922 Vian4g01432 4 28829559 28831922 ECH