Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01409 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCGAGGACTCCAGTGGGATTGAATACAAACTTTTCCTGTAATCGTCTGAAGAGACCTTTAATTATAGCATTTAAAGGGGATAAACAAAATGAGTCAGCTTTGATTGCAACTCAAGAGAAAATCCCTGTGCCCATTGCGACCACCAAGACGCAGAAGAAAAAGATAGGGAAAGCTAACAAACTACCTAAGAGAGAAAGAGTTGCCTTTGCGGAGGAAAATTCTCCTTCTTCCTTGGATGTCGACTATAATGAAGCTGCTGCTATGCTTGAAAATATTTACAAACTCAGCCCTGCTTTTGATGCTGATAATGCAGAATGTATAGATGGTAAAATCAAAAGGGTCTCCCGGAGAAGGAAGAAGATTGCTGACGATTGTGAAGAAAAGGATGTAAACGACGATAGGGTGGTCAGAAACCAGAACAAGAAAGCTAAACGGTTGAATCTTGATGAGCGGATTTCATTAAAGAGGAACTCAGACGGGGATGAAGTCGTTCCCACTCGAAATAAAAGAAAGAATAGGATGGAGAAGATTGAAGAACTTATTCGGGACTATTCCGCATCAACTGATTTTGTCGGTATGGACTGGAGAAGAATGAAAATACCTCCCGTTCTTTCTTCTTCAGAGCATGCTTGGCTTTTCAAATTGATGCAACCTATGAAGACAATACTTCAAGTGAAAGAAGGTTTACAGAAAGAGCTAGAAAGAGAACCTGCTGATAGTGAAGTAGCCGATGCAACGAACATGAACATTGCTCATGTAAAGAAAGCATTGGAGGTTGGTCAAGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTTGTCTTGTTCGTTATCAACAAATATTTTTCAGATTTTGCAAGTGGCTCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATGACAGCAATTGATCGCTTTGAACCGAACAGAAGATTTCGGCTGTCAACATATAGCTTATTTTGGATTAGACATGCTATCACTCGTTCAATGACCCTCTCAAGCTTCACACGCGTTCCGTTTGGACTTGAATCGGTTCGAGCAGAAATCCAAAAAGCTAAAACTGAGTTAACAATTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGCTAAAATATCTCCGGAAAGATACCATGACGTAATGAAGGCATCAAAATCCATTCTTTCGCTGAACTCGAGGCATATAACTACACAAGAGGAGTTCATTAACGGGGTCGTTGATAATGATGGTGTTAATGGTGATAATAGTAAGCAACCTGCTCTACTACGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCGAAGGAGAACTTAGTTATCAGACAGAGATTTGGACTTGATGGGAAGGGTGACAGAACATTGGGAGAAATTGCTAGGAACTTGAATATATCAAGGGAAATGGTTAGAAAGCACGAAATGAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGTTTGGATTATCTTCGTCGTTATGTTGTATAA 1536 0.4076 MGVVTVSSSAARTPVGLNTNFSCNRLKRPLIIAFKGDKQNESALIATQEKIPVPIATTKTQKKKIGKANKLPKRERVAFAEENSPSSLDVDYNEAAAMLENIYKLSPAFDADNAECIDGKIKRVSRRRKKIADDCEEKDVNDDRVVRNQNKKAKRLNLDERISLKRNSDGDEVVPTRNKRKNRMEKIEELIRDYSASTDFVGMDWRRMKIPPVLSSSEHAWLFKLMQPMKTILQVKEGLQKELEREPADSEVADATNMNIAHVKKALEVGQAARNKLIKHNLRLVLFVINKYFSDFASGSRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAITRSMTLSSFTRVPFGLESVRAEIQKAKTELTIELQRSPTEEEIIERAKISPERYHDVMKASKSILSLNSRHITTQEEFINGVVDNDGVNGDNSKQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIARNLNISREMVRKHEMKALMKLKHSARLDYLRRYVV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01409 511 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 PRINTS Major sigma-70 factor signature 450 462 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 PRINTS Major sigma-70 factor signature 486 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 PRINTS Major sigma-70 factor signature 471 486 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 437 509 IPR013324 -
Vian4g01409 511 CDD Sigma70_r4 440 498 - -
Vian4g01409 511 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 344 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 Gene3D RNA Polymerase Primary Sigma Factor 56 348 - -
Vian4g01409 511 Pfam Sigma-70 region 2 277 342 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 86 510 - -
Vian4g01409 511 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 352 416 IPR013324 -
Vian4g01409 511 Gene3D - 350 402 IPR036388 -
Vian4g01409 511 Coils Coil 356 376 - -
Vian4g01409 511 Gene3D - 434 511 IPR036388 -
Vian4g01409 511 Pfam Sigma-70 region 3 362 428 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 NCBIfam sigma-70 family RNA polymerase sigma factor 273 499 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vian4g01409 511 Pfam Sigma-70, region 4 446 499 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01409 Vian-Chr4 28522206 28525006 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01409 K03093 - gmx:100812580 819.69