Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01393 ATGAAGGGAGGGAGTAGCAGTAGCAGAGGAACGAAGATGACGGCGATTCTGCCGTGGGAGCTCATAATCGAAATTTTGTTGATGTTGCCTGTCAAATCCCTTGTCCGTTTCAAATGTGTCTGTAAGTCATGGCTTTCTCTTCTCTCTGATCCACACTTTGCAATATCACATTTTCAACGACTCTCATCAAGCTCTACCAGACTTTTGTTCATAGGGCTTCCTTCTCCTGAAATCCGATCCATAGATTTCAACGCATCCCTTCACGATGATTCTGCATCTTCTACTTTAAACCTCAACTTTCTACCTCCCAGTACTCATCATAATGTTCAGATAATAGGTTCCTGTAGAGGGCTTTTACTTCTGAACTCTTGTCAAAGTCTCTGGGTGTGGAATCCATCAACTGGTGTTCACAGAAAATTATCTTCCACCCCTATTGAATCCAATTTGATGCAAGCCATGTTTTTTACATTTCTTTATGGTTTCGGGTATGACCCATTAACCGATGACTACTTGGTGGTTAAAGCGTCATACAATCCAATGCCATACAATCCGCTCGGTAGTGCAACCACCCGTGTGGAGTTTTTCTCGCTCAGAACTAATGTGTGGAGAGATTATGAGGCCACCCATTTGTCTTATATGAACTCCTTTAGTGGTATCAAGGGCATCACAGAAGGGTCGCTTTTGAATGGTGCTATTCATTGGTTGGCTTTTTGCCGTAATGGATCAATGGATGTCATTGTTGTCTTTGATTTAACTGAAAGGAGTTTCTCAGAGATACTTTTGCCGGTTGAATTTTTAGATTATGACTCTGATTTTTTTGATCTGGGGGTGCTTGGGGATTTGCTTAGTATATGTTTTGCGGAGTGGGACCAGTCAGTGGAAATATGGGTGATGGAAGAGTACAGAGTGCAGTCATCCTGGACTAAGACTATTGTTGTGTCTGCTGAAAACATTCCTGCTGCTATGTACTTCTTCCCAATATGCTATACAAAAGATGGTGATATTTTTGGGACAGATGGTTGGACTGGATTGGCAAAATATAATGGCAAGGGACAGCTGCAAGAGCATCGATCCTATAGTAAAGGTTGTTACCGATCCCAGGTGGCTGTGTATACAGAGTCACTGCTTTCATTCCCCATGTAA 1143 0.4234 MKGGSSSSRGTKMTAILPWELIIEILLMLPVKSLVRFKCVCKSWLSLLSDPHFAISHFQRLSSSSTRLLFIGLPSPEIRSIDFNASLHDDSASSTLNLNFLPPSTHHNVQIIGSCRGLLLLNSCQSLWVWNPSTGVHRKLSSTPIESNLMQAMFFTFLYGFGYDPLTDDYLVVKASYNPMPYNPLGSATTRVEFFSLRTNVWRDYEATHLSYMNSFSGIKGITEGSLLNGAIHWLAFCRNGSMDVIVVFDLTERSFSEILLPVEFLDYDSDFFDLGVLGDLLSICFAEWDQSVEIWVMEEYRVQSSWTKTIVVSAENIPAAMYFFPICYTKDGDIFGTDGWTGLAKYNGKGQLQEHRSYSKGCYRSQVAVYTESLLSFPM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01393 380 CDD F-box_AtFBW1-like 15 53 - -
Vian4g01393 380 ProSiteProfiles F-box domain profile. 11 61 IPR001810 GO:0005515
Vian4g01393 380 Pfam F-box domain 17 52 IPR001810 GO:0005515
Vian4g01393 380 NCBIfam F-box protein interaction domain 113 333 IPR017451 -
Vian4g01393 380 SMART fbox_2 17 57 IPR001810 GO:0005515
Vian4g01393 380 SUPERFAMILY F-box domain 14 140 IPR036047 GO:0005515
Vian4g01393 380 SUPERFAMILY Galactose oxidase, central domain 105 343 IPR011043 -
Vian4g01393 380 Pfam F-box associated domain 227 335 IPR013187 -
Vian4g01393 380 Gene3D - 5 53 - -
Vian4g01393 380 PANTHER OS02G0783600 PROTEIN 22 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01393 Vian-Chr4 28237507 28238649 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01393 - - gmx:100809732 478.789