Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01373 ATGGGCTGCTGCTATTCATCTTCAAAGAGAACCGGAACGCCAGGTTATGAGGAACCCACCGTTCTTGCATCTCAGACACCTTTTACTGTTAGTGAAGTAGAAGCCTTGCATGAGCTCTTCAAGAAGTTGAGCAATTCCATTATTGAAGATAATCTTATTCACAGGGAAGAATTCCAGTTGGCACTATTCAGGAACAGAAACAAGAAAAATCTGTTTGCGGATAGGATTTTTGACCTGTTTGATCTCAAGCGCAATGGGGTCATTGAGTTTGGCGAATTTGTTCAATCATTGGGTATTTTTCACCCAAATGCACCTTTAGAAGACAAAATTACTTTTGCTTTTAGGTTGTATGATCTGAGGCAGACAGGGTTTATTGAAAGGGAAGAGTTGAAGGAGATGGTATTGGCACTTCTGCACGAGTCGGATCTTGAGCTTTCAGATGATATGATTGAAAGCATTGTGGACAAGACTTTTAGTGATGCTGATATAAATGGTGATGGAAAGATAGATCAAGAAGAGTGGAAAGCATTTGTATCCAAACACCCATCCTTGATAAAGAATATGACTCTTCCATATCTGAAGGATATTACGTTGGCATTTCCAAGTTTTGTTGTAAGAACAGAAATTGAAGAGTCGGATATGTGA 645 0.3938 MGCCYSSSKRTGTPGYEEPTVLASQTPFTVSEVEALHELFKKLSNSIIEDNLIHREEFQLALFRNRNKKNLFADRIFDLFDLKRNGVIEFGEFVQSLGIFHPNAPLEDKITFAFRLYDLRQTGFIEREELKEMVLALLHESDLELSDDMIESIVDKTFSDADINGDGKIDQEEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVRTEIEESDM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01373 214 Pfam EF-hand domain pair 53 95 IPR002048 GO:0005509
Vian4g01373 214 CDD EFh 109 179 IPR002048 GO:0005509
Vian4g01373 214 Gene3D - 18 212 - -
Vian4g01373 214 PRINTS Recoverin family signature 123 141 - -
Vian4g01373 214 PRINTS Recoverin family signature 76 97 - -
Vian4g01373 214 PRINTS Recoverin family signature 169 189 - -
Vian4g01373 214 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Vian4g01373 214 PANTHER CALCINEURIN B 2 211 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vian4g01373 214 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Vian4g01373 214 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Vian4g01373 214 SMART efh_1 72 100 IPR002048 GO:0005509
Vian4g01373 214 SMART efh_1 153 181 IPR002048 GO:0005509
Vian4g01373 214 SMART efh_1 109 137 IPR002048 GO:0005509
Vian4g01373 214 FunFam calcineurin B-like protein 3 18 211 - -
Vian4g01373 214 SUPERFAMILY EF-hand 21 202 IPR011992 -
Vian4g01373 214 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Vian4g01373 214 Pfam EF-hand domain pair 108 177 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01373 Vian-Chr4 27786575 27788617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01373 26 214 EF-hand Containing Proteins AT5G24270 74.603 1.94e-100 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01373 K06268 - gmx:100811649 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01373 4 27786575 27788617 Vian4g01373 4 27786575 27788617 ECH