Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01366 ATGGACTCTCTGCAACTCCATGCTCTTCAACTTCTGCATCCACGCACATCATCACCATCAATAAGCCAACCGCGTTTCCCTCCTCCGTTAAAACCAAATTCTAGAAATCTCAACTTCCGATCGTTTTCTGCTCACACGGGTGCCGCTGCTTCTCAAGACGGACCCTTTGCCTTTGAAGAGAAAATTTTCACTTCCCCCAAAGATGATAGAGCTCTCGTGCTGTCCAAAGAAACCGACGATTTTGGCTATCTCGTTGGCTTCCGCTTGATTCCTGAGACTGGTCTTGACGAGTTGATGAGTGTGTCACACGCAATACCTGGGGAAAAGTCTAGGATAGACGAGGTTGAACAACTTGGGATTAGGGAAACAGATGAAGTGAAACCTGAGACTGGATTGTCCCTCAACATTGTTTTTGTGACTGCTGAAGCTGCGCCCTATTCCAAGACAGGTGGTCTTGCTGATGTTTGTGGCTCTTTGCCAATTGCTCTGGCGGCTCGCGGGCACCGTGTGATGGTTATCACGCCCAGATACATTCATGGTACTTCTGGGGACGCTAAGTTTTCTGGGGCAGTTGATCTGAAACGAAGCATCAAAGTGCCGTGCTTTGGAGGTGCTCAAGAAATTGGTTTTTTCCATGAGTATAGGGAAGGAGTTGATTGGGTATTTGTGGACCACCCCTCGTTCCAGAGACCAGGGAATCCGTATGGAGACAAGTTTGGGACTTTTGGGGATAATCAGTTTCGGTTCACTTTACTTTCCCATGCAGCATGTGAAGCGCCATTGGTGCTTCCATTAGGGGGGTTCACTTATGGAGAAAAATGTTTATTCCTTGCTAATGATTGGCATGCCAGCCTAGTTCCAGTACTTTTGGCTTCCAAGTATCGTCCACATGGGGTATATAAGGATGCTCGAAGTATATTAGTGATACACAATATAGCACATCAGGGAGTGGAACCTGCAATTACATACAGTAATTTGGGGCTACCTGCAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTAATTGGGCAAGGACGCATGCTCTTGACACAGGTGAAGCTGTCAACTTTCTAAAAGGTGCTGTTGTTACAGCTGACCGGATTGTGACAGTAAGCAAGGGCTATTCCTGGGAGATAACTACCAGTGAAGGTGGATATGGTCTACATGAATTATTAAATAGTCGAAAAAGTATTCTCAATGGGATCACAAATGGAATCGATGTCACTGAATGGGACCCATCACGTGATAAACATATTGCTTTCAACTACTCTGTTGATGATCTTTCCGGGAAGGCCAAATGCAAGTTTGCTCTGCAGCAGGAATTGGGTCTTCCAGTGAGGCTTGATTGTCCATTGATTGGGTTCATTGGAAGACTGGACTACCAGAAAGGTATTGACTTGATCCGCTCGGCAATGCCGGAGCTCATGGAAGCTGATGTTCAGTTTGTAATGCTTGGTTCAGGAAACCCTATTTATGAAGATTGGATGAGAGCAACAGAGTCAACTTATAGAGATAAATTTCGGGGTTGGGTGGGATTTAATGTTCCAATATCTCATAAAATAACTGCAGGCTGTGATATATTGTTAATGCCATCTGCATTCGAGCCCTGTGGACTGAATCAGTTGTATGCAATGAGATATGGAACTATACCCGTCGTTCATGAAACTGGAGGCCTAAGAGATACTGTTAACAATTTTAATCCGTATACTGAAGAGGGCAAAACTGAAAGCACTGGGTGGACATTTTCTCCACTAACAAAGGAGAGCATGTTAGCGGCTCTAAGATATGCCATTCAAACATACAAAGAACACAAGTCTTCGTGGGAGGGATTGATGATAAGAGGCATGACAAAAGACTACACATGGGTAAATGCTGCTACTCAGTATGAACAAATCATCAACTGGGCATTCATCGACCCTCCCTATTGCTGA 1932 0.4498 MDSLQLHALQLLHPRTSSPSISQPRFPPPLKPNSRNLNFRSFSAHTGAAASQDGPFAFEEKIFTSPKDDRALVLSKETDDFGYLVGFRLIPETGLDELMSVSHAIPGEKSRIDEVEQLGIRETDEVKPETGLSLNIVFVTAEAAPYSKTGGLADVCGSLPIALAARGHRVMVITPRYIHGTSGDAKFSGAVDLKRSIKVPCFGGAQEIGFFHEYREGVDWVFVDHPSFQRPGNPYGDKFGTFGDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLANDWHASLVPVLLASKYRPHGVYKDARSILVIHNIAHQGVEPAITYSNLGLPAEWYGALEWVFPNWARTHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGYGLHELLNSRKSILNGITNGIDVTEWDPSRDKHIAFNYSVDDLSGKAKCKFALQQELGLPVRLDCPLIGFIGRLDYQKGIDLIRSAMPELMEADVQFVMLGSGNPIYEDWMRATESTYRDKFRGWVGFNVPISHKITAGCDILLMPSAFEPCGLNQLYAMRYGTIPVVHETGGLRDTVNNFNPYTEEGKTESTGWTFSPLTKESMLAALRYAIQTYKEHKSSWEGLMIRGMTKDYTWVNAATQYEQIINWAFIDPPYC 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01366 643 Gene3D Glycogen Phosphorylase B; 154 632 - -
Vian4g01366 643 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 133 636 - -
Vian4g01366 643 Pfam Starch synthase catalytic domain 135 393 IPR013534 -
Vian4g01366 643 CDD GT5_Glycogen_synthase_DULL1-like 135 632 - -
Vian4g01366 643 Gene3D Glycogen Phosphorylase B; 408 619 - -
Vian4g01366 643 FunFam Starch synthase, chloroplastic/amyloplastic 135 419 - -
Vian4g01366 643 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 125 642 - -
Vian4g01366 643 NCBIfam glycogen/starch synthase, ADP-glucose type 135 632 IPR011835 GO:0004373
Vian4g01366 643 Hamap Glycogen synthase [glgA]. 134 636 IPR011835 GO:0004373
Vian4g01366 643 Pfam Glycosyl transferases group 1 451 603 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01366 Vian-Chr4 27649939 27656576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01366 134 633 Glycosyltransferase AT3G01180 50.690 1.55e-168 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01366 K00703 - gmx:100807354 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01366 4 27649939 27656576 Vian4g01366 4 27649939 27656576 ECH