Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01352 ATGAAAGGTTCATGTCTTCTTCCTTCCCACTCTTTCAACGGAATCAGGACAAGCAAAGAGCTTCCGCATATGCTATCATTGTGTGAGTTGAAAAGCATATCATGCTTCTCAGTTTGTAATCAAAAGCAAAATTACAGTCAAAAGCTTTACATTATTCCAATTAAGACTGCTTCTGCTCGGGTCTGCATCTCAAGATCTTCAGTTGGGTCATTGGAATGTGGTGGGACAGGCCCTCATAGTGATGCTTATTCAGGATTTTCAGCTCCAAATGACCATCAGAGGATTGGAAGTTTAGAAAGAGAATTGGAAGAATTATTTGATGAAGTGAAAAGAATGATCAGGATGGGAAATAAAAGTGATGCTATAGACCTGCTAACTGCCAATTACGAAGCAGTCAAAGAGAGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGATGTTATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTTTGTTGGATATGATGAAAGAAATTGTTGACAATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCTGTCTACATTATGGAGGGGACCTACGGTAAGGACAGTACTTTACTTATCACACCTTATTTGGGTATGGCAAAAGTTCTTGGCTCTTTTGGAAAAGCAACAAAAGCAATAGAGATTTACCAGCGTGTGATCACTCTTTTGGGATCAAGTAGAGGTGCCCAAAGTAAGGATTTGGTCGTACCTTTACTTAGCCTCGGCAATCTTTTACTCAAAGAAGGGAGAGCCAATGATGCTGAATCTCATTTTACTAGAGTTCTCGACATATACACTAAATTATATGGACAAAATGATGGAAGAATTGGAATTGCTATGAGTTCCCTAGCCCGTGTGAAGAGTGCCCAAGGAAAATCAGATGAAGCAATACAATTGTTTAAACGTGCTATTCAGGTCATGAAGGACTCAAATTACTTGTCACCAGATGACAGTATATTGGAAAAGATGAGAGTGGATCTAGCTGAATTACTTCATGCCGCTGGGAGAGGACAAGAAGGTAGAGAGCTATTAGAGGAGTGTTTGTGGATCACTGAGAAGCACAAAGGAAAGGAGCACCCAATCCTGGTGACACACATGATAAATCTTGCAACTTCGTATTCACGGTCAAAGAATTATGCAGATGCCGAGCACCTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCAGAAGGGAACTGATGACCAGTCCATCAGCTTTCCTATGTTACATCTTGCAGTTACACTCTACCATTTAAAAAATGATGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTACGCATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTTCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGACAGTGAATTACTCGGGTTGCTTAGAAGGATCCTGAATATCCAAGAAAGAGAATTTGGATATGAAAGTGAGGAGATTTTGGTTACGCTGAAAAAAATTGTATACTACTTGGATAAATTAGGGAAAAAAGATGAAAAGCTTACCCTTCACAGAAGACTGTCTGTGCTTAGGAAAAAGTATAACCAGATGGTTAATTATTAA 1698 0.3963 MKGSCLLPSHSFNGIRTSKELPHMLSLCELKSISCFSVCNQKQNYSQKLYIIPIKTASARVCISRSSVGSLECGGTGPHSDAYSGFSAPNDHQRIGSLERELEELFDEVKRMIRMGNKSDAIDLLTANYEAVKESLNAGTKGIEEAAILDVIALGYMAVGDLKFVGSLLDMMKEIVDNLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRAVYIMEGTYGKDSTLLITPYLGMAKVLGSFGKATKAIEIYQRVITLLGSSRGAQSKDLVVPLLSLGNLLLKEGRANDAESHFTRVLDIYTKLYGQNDGRIGIAMSSLARVKSAQGKSDEAIQLFKRAIQVMKDSNYLSPDDSILEKMRVDLAELLHAAGRGQEGRELLEECLWITEKHKGKEHPILVTHMINLATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDSELLGLLRRILNIQEREFGYESEEILVTLKKIVYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01352 565 Coils Coil 95 115 - -
Vian4g01352 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 92 548 - -
Vian4g01352 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Vian4g01352 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Vian4g01352 565 SMART tpr_5 187 220 IPR019734 GO:0005515
Vian4g01352 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Vian4g01352 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Vian4g01352 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Vian4g01352 565 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Vian4g01352 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Vian4g01352 565 Pfam MalT-like TPR region 187 468 IPR041617 -
Vian4g01352 565 SUPERFAMILY TPR-like 188 428 IPR011990 GO:0005515
Vian4g01352 565 Gene3D Tetratricopeptide repeat domain 356 563 IPR011990 GO:0005515
Vian4g01352 565 Gene3D Tetratricopeptide repeat domain 92 355 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01352 - - gmx:100805230 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01352 4 27428939 27432930 Vian4g01352 4 27428939 27432930 ECH