Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01351 ATGGAACGTTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCTGAGACCGTGGCCAGGACCAGGCCGCGCTATAACCACCACTACAGCGCCGGTGCCGGGAACCACCGCCACCGCGGCGGAGGTGCCCGTCATGCAAAGGCGCAGGACTCGCAGCTCAGCGTCACAACCAGCTACCGCATTCTGTGCCACGATATGAAGGCCGGCGGCGTGATAGGAAAGTCCGGCAGCATTATAAAGTCCATAAGACAGCACACCGGCGCGTGGATCAACGTGCACGAGCTCATGCCGGGGGATGAGGAGCGGATCATCGAGATTTCGGACACGCGCAGGCGAGACCCCGAGGGGAGAATGCCAACGTTCTCGCCGGCGCAGGAGGCGCTGCTGCTGATCCACGAGCGGATTCTGGAAAGCGACGCGGCGTTCGGGGTGGCAGAAGAGGAGGAAGAGTACGGCGGGAGGGGTGGCGGCGGCGGCGGGAGAGACCGCGTGGCGACGAGGCTGGTGGTGTCGAGAATGCATGTGGGGTGTTTGTTGGGAAAGGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACCCAGATTAGGATACTCCCTAGAGATCACAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTAGTAGGTGATGTAAATGCTGTAAAGGATGCTATAGCTAATATATCATCACGGTTGAGGGAGAGTCAGCACCGGGACCGTAGTCATTTCCATGGACGTGTACATTCACCAGAGCGATTTTTCTCTCCCGACAATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCTGTGGATGGGGCCACTTTTGGATCACGAGGTTCTAATACAACTAGCAGAAACAATAGTCACTCTGCAATGAATTATTTAATGGAGCCTGGGGCTGCTTCTGTTGCCGATGACGTGCAGGGCTACTATGGGGAGGAACTGGTTTTCCGTGTACTCTGTCCAGTTGAGAGAGTTGATCGTATAATTGGGGAATCAGGAGGAATTGTAGAGTTCCTTCAGAATGAGGTTGGTGTAGATGTTAAGGTCACTGATCCTGTTGGTGGTTCGGATGAACAGATAGTTATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAAGAAGCTTTGTTACATATACAAACCCGCATTGTCGATCTTATTCTAGATAAAGACAATACTATAACCACCAGGCTTGTTGTCCCATCCAGTGAAATTGAATGCTTAGACGGAAAGGATGCTTCACTTTCAGAAATAAGGAGGTTGACTGGTGCTAATATTCAAATTTTGCCCAGAGACGAGCTACCTCCCTGTGTTGCAAAAACCGATGAACTTGTACAGATTGTAGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTGGAGGTGACATCAAGATTAAGAAGTTACTTGTACAGGGATTTCTTTCAAAGGGACATAGTACCACAAGTTTCATTGCCTGGTGTGGAGGCATCTTCTTCCAATAATTTAGTTCCAGTTACTGAAACTCTCACGACCTATCAAAATATGCAAACTGTTGCCGCAGCCCTTCCATTAAAGGAAACTGGAGGATCTAGCACTGAGATAGGAAAGCAGAAAGAAAGTGATCGCCGCGATGATGTGCTTAGTGGTTTAAATAGGATTGCTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTATACCAGAGTATGCAGTACCAAAGCTTATAGCAAAATCCAAAAGCAAGCTTTCCCAAATAAGTGAGTTATCAGGAGCCAATGTAACCCTAGTAGAGGATAGACCAGACGTGACGCAGAAGATTATTCAGATATCTGGAACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTGCTGCAAGGGTTTATTTTGAGCACACAAGAAGACGGCCCTTAA 1938 0.4881 MERSRSKRNYYYDQDYDSETVARTRPRYNHHYSAGAGNHRHRGGGARHAKAQDSQLSVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRMPTFSPAQEALLLIHERILESDAAFGVAEEEEEYGGRGGGGGGRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKDAIANISSRLRESQHRDRSHFHGRVHSPERFFSPDNDYIPHVTSGSRRSSVDGATFGSRGSNTTSRNNSHSAMNYLMEPGAASVADDVQGYYGEELVFRVLCPVERVDRIIGESGGIVEFLQNEVGVDVKVTDPVGGSDEQIVIITSEEGPDDELFPAQEALLHIQTRIVDLILDKDNTITTRLVVPSSEIECLDGKDASLSEIRRLTGANIQILPRDELPPCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPQVSLPGVEASSSNNLVPVTETLTTYQNMQTVAAALPLKETGGSSTEIGKQKESDRRDDVLSGLNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLSQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01351 645 SMART kh_6 165 241 IPR004087 GO:0003676
Vian4g01351 645 SMART kh_6 568 638 IPR004087 GO:0003676
Vian4g01351 645 SMART kh_6 408 482 IPR004087 GO:0003676
Vian4g01351 645 SMART kh_6 324 397 IPR004087 GO:0003676
Vian4g01351 645 SMART kh_6 58 139 IPR004087 GO:0003676
Vian4g01351 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 56 110 IPR036612 GO:0003723
Vian4g01351 645 CDD KH-I_PEPPER_rpt2_like 169 241 - -
Vian4g01351 645 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 52 441 - -
Vian4g01351 645 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Vian4g01351 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 247 IPR036612 GO:0003723
Vian4g01351 645 CDD KH-I_PEPPER_rpt2_like 411 482 - -
Vian4g01351 645 CDD KH-I_PEPPER_rpt1_like 325 393 - -
Vian4g01351 645 Gene3D - 324 485 - -
Vian4g01351 645 MobiDBLite consensus disorder prediction 273 299 - -
Vian4g01351 645 MobiDBLite consensus disorder prediction 34 53 - -
Vian4g01351 645 ProSiteProfiles Type-1 KH domain profile. 325 392 - -
Vian4g01351 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 317 383 IPR036612 GO:0003723
Vian4g01351 645 ProSiteProfiles Type-1 KH domain profile. 166 236 - -
Vian4g01351 645 Pfam KH domain 169 237 IPR004088 GO:0003723
Vian4g01351 645 Pfam KH domain 328 380 IPR004088 GO:0003723
Vian4g01351 645 Pfam KH domain 411 476 IPR004088 GO:0003723
Vian4g01351 645 Pfam KH domain 571 634 IPR004088 GO:0003723
Vian4g01351 645 Pfam KH domain 62 110 IPR004088 GO:0003723
Vian4g01351 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 561 639 IPR036612 GO:0003723
Vian4g01351 645 CDD KH-I_PEPPER_rpt1_like 59 132 - -
Vian4g01351 645 Gene3D K Homology domain, type 1 568 640 IPR036612 GO:0003723
Vian4g01351 645 ProSiteProfiles Type-1 KH domain profile. 569 633 - -
Vian4g01351 645 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 402 490 IPR036612 GO:0003723
Vian4g01351 645 Gene3D K Homology domain, type 1 167 245 IPR036612 GO:0003723
Vian4g01351 645 Gene3D K Homology domain, type 1 52 166 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01351 Vian-Chr4 27361647 27366607 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01351 K21444 - gmx:100804167 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01351 4 27361647 27366607 Vian4g01351 4 27361647 27366607 ECH