Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01288 ATGGCCACTCTCTTTAGTTTTCACACCACCCTTCGCCCCTCTTGCTATCTTCCCTCATCACTCTCCTCACCTTATCTGCTGCTACCTCCACACCCCTTCTCCAACACCCTCTCCACAACTTTCTTGGGCCACACTGTAAGCCTCAAATATGCTGCCACTTCCACAACCAACACTGGCCGTTCACTCTCTGCTCGCATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTGACTGATGCTGTGAAGGAGCATGTGGAAGATAAGGTGGGAAAGGCGGTTCAGAAGCATACTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTACTAGAGGAGGAGGTGAATTTGGAAGAGGACCCAGAACTCGTAGGTGTGAGGTGACTTTGTTCACTAAGAGGCACGGAGTGTTGCGGGCTGAGGAGGACGCTGAAAGCACCTATGGAAGTATAGATTTGGTATCATCGATCATTCAGAGAAAGTTGAGGAAAATAAAGGAAAAGGAGTCAGATCATGGTCGCCACATGAAGGGTTTCAATAGGTCGAAGGTTAGGGAGCCGGTGGAGCAATTACCTGTGGTAGAGGATGAAATATTATCCCCAGAGGAGGAAGAAGAATCAATTGATGAGGTTGTTCGCACAAAGTACTTTGACATGCCACCCTTGACTGTGTCTGAAGCAATAGAGCAACTTGTAAATGTTGATCATGACTTCTATGGTTTTCGAAACGAAGAAACTGGGGAAATTAATATTGTGTATAAAAGAAAAGAAGGTGGATATGGACTCATTATACCCAAAGGTAATGGTGAAGCAGAGAAATTGGAGCCTGTTGTGCTTGAACCAGCTGTAGAACCCTCCCTGAAAGAATGA 891 0.4624 MATLFSFHTTLRPSCYLPSSLSSPYLLLPPHPFSNTLSTTFLGHTVSLKYAATSTTNTGRSLSARMSWDGPLSSVKLIIQGKNLELTDAVKEHVEDKVGKAVQKHTHLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVLRAEEDAESTYGSIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRSKVREPVEQLPVVEDEILSPEEEEESIDEVVRTKYFDMPPLTVSEAIEQLVNVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGNGEAEKLEPVVLEPAVEPSLKE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01288 296 PANTHER 30S RIBOSOMAL PROTEIN 61 282 - -
Vian4g01288 296 Gene3D - 228 277 IPR038416 -
Vian4g01288 296 Gene3D - 76 180 IPR036567 -
Vian4g01288 296 NCBIfam ribosome-associated translation inhibitor RaiA 76 180 IPR003489 GO:0044238
Vian4g01288 296 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 76 182 IPR036567 -
Vian4g01288 296 FunFam Ribosome-binding factor PSRP1, chloroplastic 77 180 - -
Vian4g01288 296 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 78 175 IPR003489 GO:0044238
Vian4g01288 296 CDD RaiA 76 175 IPR003489 GO:0044238
Vian4g01288 296 FunFam ribosome-binding factor PSRP1, chloroplastic 228 279 - -
Vian4g01288 296 Hamap Ribosome hibernation promoting factor [hpf]. 75 273 IPR034694 -
Vian4g01288 296 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 216 269 IPR032528 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01288 - - gmx:100803327 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01288 4 26069821 26071565 Vian4g01288 4 26069821 26071565 ECH