LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian4g01201	ATGTCTTCTGTAAGCAAGGGTGATCGGAAGGCTTCTCTTGATGCAGCATCATGGTTGTTCAATGTGGTCACGTCTGTGGGAATAATCCTGGTGAATAAGGCCCTAATGGCTACATATGGTTTTAGTTTTGCTACTACTTTAACTGGTCTGCATTTTGCCACGACAACTTTGTTGACACTCATTCTTAAATCGCTGGGATATATTCAGACCTCTCATCTTCCATTATCTGATATTATCAAATTTGTCTTATTTGCAAATTTCTCCATCGTTGGGATGAATGTGAGTTTAATGTGGAATTCTGTTGGTTTTTATCAGATTGCTAAGCTGAGCATGATTCCAGTATCTTGTTTTCTGGAGGTTGTCTTGGACAATGTACGATATTCAAGGGACACAAAGCTTAGTATTGTTTTGGTTTTGCTTGGTGTTGCTGTCTGTACAGTCACCGATGTCAGCGTTAATGCAAAAGGTTTTATTGCTGCTTTGATAGCAGTTTGGAGCACAGCCCTGCAACAGTATTATGTGCATTATCTTCAGAGGAAGTATTCTATTGGATCATTTAACTTGTTGGGCCACACAGCACCAGCACAGGCAGGAAGTTTACTCCTAGTAGGCCCCTTTCTGGACTATTGGTTGACAGGCAAACGAGTTGATGCCTACGGATATGGCTTGACATCAACTTTGTTCATCATTCTGTCTTGCACCATTGCAGTAGGGACAAACCTCAGTCAGTTCATCTGCATCGGTAGGTTCACGGCTGTATCATTCCAAGTCCTTGGTCACATGAAGACTATTTTGGTCCTAATCCTGGGCTTCATTTTCTTTGGAAAAGAGGGTCTCAATCTACATGTTGTTCTGGGTATGATCGTTGCGATAGCAGGAATGGTCTGGTATGGCAATGCTTCTTCTAAGCCAGGGGGGAAAGAGCGTCGTAGCTTTTCTCTTCCCAAAACACAAGATTATAGTTCACTACCTGTGTCCTCTGAACCAGACACGAAGGCATAG	1002	0.4251	MSSVSKGDRKASLDAASWLFNVVTSVGIILVNKALMATYGFSFATTLTGLHFATTTLLTLILKSLGYIQTSHLPLSDIIKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCFLEVVLDNVRYSRDTKLSIVLVLLGVAVCTVTDVSVNAKGFIAALIAVWSTALQQYYVHYLQRKYSIGSFNLLGHTAPAQAGSLLLVGPFLDYWLTGKRVDAYGYGLTSTLFIILSCTIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLILGFIFFGKEGLNLHVVLGMIVAIAGMVWYGNASSKPGGKERRSFSLPKTQDYSSLPVSSEPDTKA	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian4g01201	333	MobiDBLite	consensus disorder prediction	303	333	-	-
	Vian4g01201	333	Pfam	Triose-phosphate Transporter family	24	297	IPR004853	-
	Vian4g01201	333	PANTHER	SOLUTE CARRIER FAMILY 35	17	301	-	-
	Vian4g01201	333	MobiDBLite	consensus disorder prediction	315	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian4g01201	Vian-Chr4	21529444	21534053	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian4g01201	18	298	Organic Solute Cotransporters	AT1G77610	26.910	5.96e-11	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian4g01201	K26224		-	gmx:100800306	607.831