Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01112 ATGTTGTATCAATCCATTTTCCATCAAACCTTTTTGTCATTTCTCCTTTGTATCACAACTCTTTCCTTGGTTGCTTCTGATCCCACAGATGGCTTCACCCGTCTTCCACTATCTAGCTCCAACTTTCAGGTCCAAAAGCCTCACGATGTTCCACAAGACCAGCGTTACACCTTTTCAAATGGAGTGCACACATTTATTGTATTCAACACAGACAAGCCTCACACGAGTACCAGCAATACAAAACCACGAACTGAGATTCGTATAACGGGCTACGATTATACATCTGGTGTGTGGCAATTTGAAGGGTATTTCTACGTCCCCAGTGGCACAACCGGGGTGTGCATCCAGCAAGTGTTCGGTGGAGTCACCGCTGCCACAACCTCTCAGAGTAGGGTCTATAGTGGATCTCTCACTCATTACTTATCACCTACTCTGGAAACAAACATCTACAATAAGTGGTACCGTTTCAACGTGATCCATGATGTGGGTGCCAACAACGTAAAGATTTTTATCAATGGGGTGCAGAAATTTAATGGAAATGGTCGTGGAGCCGACGATCACTATTTTAAGTTCGGGGTTTATGCACAGGACGGTGCTTCCTACCGCATGGAATCTCGATGGAGGGATATCAAGATTTTTAGAAGATAA 648 0.4429 MLYQSIFHQTFLSFLLCITTLSLVASDPTDGFTRLPLSSSNFQVQKPHDVPQDQRYTFSNGVHTFIVFNTDKPHTSTSNTKPRTEIRITGYDYTSGVWQFEGYFYVPSGTTGVCIQQVFGGVTAATTSQSRVYSGSLTHYLSPTLETNIYNKWYRFNVIHDVGANNVKIFINGVQKFNGNGRGADDHYFKFGVYAQDGASYRMESRWRDIKIFRR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01112 215 Pfam Alginate lyase 40 212 IPR014895 -
Vian4g01112 215 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 204 IPR013320 -
Vian4g01112 215 Gene3D - 33 212 - -
Vian4g01112 215 PANTHER BINDING PROTEIN, PUTATIVE, EXPRESSED-RELATED 14 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01112 Vian-Chr4 18151076 18152038 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01112 - - gmx:100791107 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01112 4 18151076 18152038 Vian4g01112 4 18151076 18152038 ECH