Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01104 ATGGCGACAAAAGCTTTGTCTTTCGCTTTGTCCTTCAACGACCTCACCAACTGCTTCTCCTCCAGTCCGCCATCCGCCGCCGCCGCAGCTAAAGTTTCCGTCTTTACCGTCAGATGCTCTTCGGGTAATGGAGAAAGACCTTGGAAAAACTCAGATGCTAGACTGGTTCTAGAAGATGGTTCAATTTGGAGAGCGAAATCGTTTGGTGCTTCAGGGACTCAAGTTGGCGAAGTTGTTTTCAATACATCACTGACAGGGTATCAGGAAATTTTGACAGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCTCATATTGGGAATACTGGCGTTAATTTTGATGATGAGGAATCGATGCAGTGTTTCCTTGCTGGTCTTGTAATTAGAAGTTTGAGCATCAGTACCTCTAACTGGAGATGTGCGAAGGCTCTGGGTGAATACTTAGCTGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCAATCACACGCAGATTGCGGCAAGATGGCAGTCTTATTGGTGTTTTGAGCACGGACAATTCCAAAACAGATGAGCAACTGCTTCAGATGTCTAAGTCATGGGACATTGTTGGTGTTGATCTAATAAGTGGAGTATCATGCAAAAGTCCACATGAGTGGGTTGATAAAACAAAGCAACAATGGGAGTTTAGTTCCGGTAAAGTGGCAAGAGAGAATTTCCATGTGGTTGCTTATGATTTTGGAATCAAGCATAATATTCTTAGACGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATCTACATGGCCAGCATCAGAAACTTTGAAGATGAAGCCAGATGGGGTTCTTTTTAGTAATGGCCCTGGAGATCCATCTGCTGTTCCATATGCTGTTGAAACAGTGAAGAATATAATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGAGGTAAAACATTCAAGATGAAATTTGGTCACCACGGAGGAAATCATCCTGTTCGTAACCTTCAAACCGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCTGCAACACTGCCGGAAGGAGTGAAGGTTACTCATATCAATCTCAATGATGGAAGCTGTGCCGGTCTTTCTTTCCCTGCACAACAACTTATGTCTCTTCAATACCACCCTGAAGCATCCCCTGGACCTCATGATTCTGACTACGCTTTTAAGGAGTTTATAGAGCTAATGAAGCAAGGAAAAAACAGAACAAAGGAAAGTCTACCCGAATTATCTGCACTGCATAGCAGTTGA 1317 0.4351 MATKALSFALSFNDLTNCFSSSPPSAAAAAKVSVFTVRCSSGNGERPWKNSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESMQCFLAGLVIRSLSISTSNWRCAKALGEYLAERNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKTDEQLLQMSKSWDIVGVDLISGVSCKSPHEWVDKTKQQWEFSSGKVARENFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLQTGHVEISAQNHNYAVDPATLPEGVKVTHINLNDGSCAGLSFPAQQLMSLQYHPEASPGPHDSDYAFKEFIELMKQGKNRTKESLPELSALHSS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01104 438 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 238 424 - -
Vian4g01104 438 PRINTS Glutamine amidotransferase superfamily signature 281 290 - -
Vian4g01104 438 PRINTS Glutamine amidotransferase superfamily signature 393 406 - -
Vian4g01104 438 PRINTS Glutamine amidotransferase superfamily signature 308 319 - -
Vian4g01104 438 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 55 179 IPR002474 -
Vian4g01104 438 CDD GATase1_CPSase 239 415 IPR035686 -
Vian4g01104 438 SMART CPSase_sm_chain_2 51 181 IPR002474 -
Vian4g01104 438 PRINTS Anthranilate synthase component II signature 308 319 - -
Vian4g01104 438 PRINTS Anthranilate synthase component II signature 281 290 - -
Vian4g01104 438 PRINTS Anthranilate synthase component II signature 393 406 - -
Vian4g01104 438 Hamap Carbamoyl-phosphate synthase small chain [carA]. 51 422 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vian4g01104 438 Gene3D - 200 422 IPR029062 -
Vian4g01104 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 239 253 - -
Vian4g01104 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 325 342 - -
Vian4g01104 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 350 361 - -
Vian4g01104 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 308 324 - -
Vian4g01104 438 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 278 292 - -
Vian4g01104 438 NCBIfam glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 53 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Vian4g01104 438 SUPERFAMILY Class I glutamine amidotransferase-like 231 420 IPR029062 -
Vian4g01104 438 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 49 409 - -
Vian4g01104 438 Gene3D - 51 199 IPR036480 -
Vian4g01104 438 FunFam carbamoyl-phosphate synthase small chain, chloroplastic 200 422 - -
Vian4g01104 438 FunFam Carbamoyl-phosphate synthase small chain 50 199 - -
Vian4g01104 438 Pfam Glutamine amidotransferase class-I 242 416 IPR017926 -
Vian4g01104 438 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 52 197 IPR036480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01104 Vian-Chr4 17820423 17822837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01104 K01956 - gmx:100788470 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01104 4 17820423 17822837 Vian4g01104 4 17820423 17822837 ECH