Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01068 ATGGAAGATATGGAGATAAAATCCCTTTCTTCCTTCTTTCTTCTGTTTCTCATAGTCATTACTCACACACATGTTTGTTTAGCGGAATGTGATAACGTGAAGGACTATTGCCCTACAAGTACGAAACCCCAAAAGCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAACACAAGTGCCCATGATTTCAAGAGCAAGGAACTAAGCAAACCTGGTTCCAGGGACGATTTTGGTGCCCTGGTTAAAATTGTTACTGCTTCAAAGTTTGTGGGGCTGAACACTCTTGGCCTTGCGATTGGAAGAAGTGACATTGAAGTGGATGGGCTTGTGAACATCCACAATCACCCCAGAGCCACTGAGATGGTGTATGTGAACCAAGGTACGTTGCTGGCTGCGTTTCTCAACACCCAAAACCAGCTCTTCCAGAAGACTCTCAATGCTGGTGACGTCTTTGTCATCCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGTGAACAAGTTGCAACTTTGTTCTCAGTCTTCAACGCCCAAAATCCAGGGCTAGGATCACTCTCTCCCCAACCCTCTCAATCTCAAAACACACTTCAATCGGTTCAGAACATAAAGAACAAGCTCAATTCACTCTCTCACTCACAGTTTCATGCTGATACTGATTTCACTTTGCAATTGCTCGATATCGTTTCTGACCATTAG 705 0.4468 MEDMEIKSLSSFFLLFLIVITHTHVCLAECDNVKDYCPTSTKPQKQAIFINGLSCENPDNTSAHDFKSKELSKPGSRDDFGALVKIVTASKFVGLNTLGLAIGRSDIEVDGLVNIHNHPRATEMVYVNQGTLLAAFLNTQNQLFQKTLNAGDVFVIPKGLFHFFLNRGEQVATLFSVFNAQNPGLGSLSPQPSQSQNTLQSVQNIKNKLNSLSHSQFHADTDFTLQLLDIVSDH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01068 234 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Vian4g01068 234 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Vian4g01068 234 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Vian4g01068 234 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 27 197 - -
Vian4g01068 234 SMART Cupin_1_3 69 211 IPR006045 -
Vian4g01068 234 SUPERFAMILY RmlC-like cupins 74 194 IPR011051 -
Vian4g01068 234 Pfam Cupin 80 201 IPR006045 -
Vian4g01068 234 CDD cupin_OxOx 31 190 IPR001929 GO:0030145
Vian4g01068 234 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Vian4g01068 234 Gene3D Jelly Rolls 28 219 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01068 Vian-Chr4 17067767 17068471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01068 15 185 Miscellaneous Gene Families AT5G20630 35.838 3.01e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01068 - - var:108332215 445.277