Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01067 ATGACAATCTTGGCTCCCCTTAATGCTCCAAATACTGATGGCATAGACCCAGATTCAAGTTCCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCAACGTGGCCCATCCTTCCACAAATATTGTAGTGAGGAGAATATCAGGCACTACTCCCACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGTGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCTGACAAGGGCAGAGGAGGCTATGTAGCTAATGTTTCTATAAGTGATATAAGAATGGAGAGAGTGAAGATACCTATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTATTCCTAGATTCAAAGATATTTTGATCAGTAATGTGGTCAGTATAAATGCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGTTTATGCTTCAAAAACATTACCCTGCATGGTGTTGCCTTATCCAGAAGATGGCGTTGTGAATATGTTTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCTTGTCTCGAGTTGCAGAACAATAGCTATTCATCCTGGTGTTCACCTTCCTGA 687 0.4119 MTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGINVAHPSTNIVVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAIPRFKDILISNVVSINATKAPVLEGVEGSSFEGLCFKNITLHGVALSRRWRCEYVSGFATEVFPVPCLELQNNSYSSWCSPS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01067 228 SMART pbh1 20 52 IPR006626 -
Vian4g01067 228 SMART pbh1 111 132 IPR006626 -
Vian4g01067 228 SMART pbh1 82 103 IPR006626 -
Vian4g01067 228 SMART pbh1 54 76 IPR006626 -
Vian4g01067 228 Pfam Glycosyl hydrolases family 28 2 202 IPR000743 GO:0004650|GO:0005975
Vian4g01067 228 SUPERFAMILY Pectin lyase-like 1 217 IPR011050 -
Vian4g01067 228 PANTHER PECTIN LYASE-RELATED 1 223 - -
Vian4g01067 228 Gene3D - 1 204 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01067 Vian-Chr4 17048457 17049258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01067 1 216 Glycoside Hydrolase AT4G33440 70.370 5.49e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01067 - - vra:106780727 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01067 4 17048457 17049258 Vian4g01067 4 17048457 17049258 ECH