Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01053 ATGCATTCCAATGTTCAGTTTTACATGCAAAATTTTACTACAAAAATTGTGAACATGATGAAAGCAGAGGGTCTATATGCTTCGGAAGGAGGACCAATTATATTGTCACAGATTGAAAATGAATACCAAAACATTGAAAGGGCATTTGGCGAAGCAGGATCGCCGTATGTTCAATGGGCTGCAAAAATGGCTGTGGGACTTAACACTGGCGTTCCATGGATTATGTGCAAACAAACTGATGCTCCTGATCCTGTGATAAACACATGCAACGGCATGAAATGTGGAGAAACTTTCACTGGACCAAATTCCCCCAATAAACCTGCTTTGTGGACTGAGAATTGGACATCTTTCTATCAAGTATATGGTGGACAGCCATACCTAAGGTCTGCTGAAGATCTAGCATTTCATGTCACCCTTTTTATTGCAAGAAATGGAAGCTATGTCAACTATTATATGTACCATGGAGGAACCAACTTTGGGAGAACAAGTTCTGCTTATGTTATAACAGCCTATTATGATCAAGCTCCACTTGATGAATACGGTTTACTCAGGCAACCCAAGTGGGGACATCTCAAGCAGTTACATACTGCAATAAAGTCTTGCTCTACCACTTTACTACAAGGAGTGCAGAGGAACTTCTCTTTAGGTCAACTGCAGGAAGGATATGTCTTTGAAGAAGAAAAAGGAGAATGTGTTGCATTCCTTATAAACAATGATAGAGAAAAGAAGGTCACTGTGCAATTCCGTAACAGATCATACGAATTGCTCCCCAAGTCAATTAGCATCTTACCAGATTGTCAAAATGTGACATTCAACACTGCAAATGTAAATACCACAAGCAACAAAAGGATCATAAGTCCTAAACAAAACTTCAGTTCAGTGGATGTTTGGAAGCAATTCCAAGATGTCATTCCAAGCTTTGAAGACACCTCAGTAAAATCAGATTCATTTCTTGAGCAAATGAATACAACCAAAGACGAAACGGATTACCTTTGGTATATTCATAGGTTTGAAAACAATTTATCTTGCAGCAAACCAACACTCAATGTTCAGTCTGCTGCTCATGTTGCCCATGCATTTGTGAACAACACGTACATAGGTGGGGCACATGGAAATCATGATGTTAAAAATTTCACCTTAGAGCTCCCAGTTACATTACATGAAGGGACAAACAACCTTTCTATACTTAGTGTTATGGTTGGACTTCCGGATTCAGGGGCATTTCTTGAAAGAAGGTTTGCTGGTTTAATCAGTGTGCAACTTCATTGCAGCGAAGAAGAGTCTCTTAATTTGACCAATTCCTTGTGGGGTTATAAGGTTGGATTACTGGGGGAGCAATTACAAGCATATAAAGGACAAAATAGCAGTGGTATTGAATGGAGTCAACTGGGGAATATTGAGGAACAAGCGCTAATTTGGTACAAGACTGCATTTGACACACCAGAGGGAGATGACCCTGTTGTCTTGGACCTTGGTTCAATGGGAAAAGGTGAGGCTTGGGTGAACGGACAAAGCATTGGTCGTTATTGGATATTGTTTCACGATTCCAAAGGCAACCCTTCACAATCACTGTATCATGTGCCTCGGTCTTTCCTCAAAGACTCTGGAAACGTTTTGGTTTTGGTGGAGGAAGGTGGTGGGAACCCTCTTGGCATCTCCTTGGACACTGTTTCAGTCACAGATTTACACCAAAACTTTTATAAATTATCATTTCCCTCTTCTTCTTAG 1728 0.4039 MHSNVQFYMQNFTTKIVNMMKAEGLYASEGGPIILSQIENEYQNIERAFGEAGSPYVQWAAKMAVGLNTGVPWIMCKQTDAPDPVINTCNGMKCGETFTGPNSPNKPALWTENWTSFYQVYGGQPYLRSAEDLAFHVTLFIARNGSYVNYYMYHGGTNFGRTSSAYVITAYYDQAPLDEYGLLRQPKWGHLKQLHTAIKSCSTTLLQGVQRNFSLGQLQEGYVFEEEKGECVAFLINNDREKKVTVQFRNRSYELLPKSISILPDCQNVTFNTANVNTTSNKRIISPKQNFSSVDVWKQFQDVIPSFEDTSVKSDSFLEQMNTTKDETDYLWYIHRFENNLSCSKPTLNVQSAAHVAHAFVNNTYIGGAHGNHDVKNFTLELPVTLHEGTNNLSILSVMVGLPDSGAFLERRFAGLISVQLHCSEEESLNLTNSLWGYKVGLLGEQLQAYKGQNSSGIEWSQLGNIEEQALIWYKTAFDTPEGDDPVVLDLGSMGKGEAWVNGQSIGRYWILFHDSKGNPSQSLYHVPRSFLKDSGNVLVLVEEGGGNPLGISLDTVSVTDLHQNFYKLSFPSSS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 496 512 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 28 43 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 146 161 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 165 181 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 469 483 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 PRINTS Glycosyl hydrolase family 35 signature 109 124 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 30 42 IPR019801 GO:0004553|GO:0005975
Vian4g01053 575 Gene3D Glycosidases 1 202 - -
Vian4g01053 575 FunFam Beta-galactosidase 151 278 - -
Vian4g01053 575 PANTHER BETA-GALACTOSIDASE RELATED 8 567 IPR001944 GO:0004553|GO:0005975
Vian4g01053 575 Pfam Beta-galactosidase jelly roll domain 467 542 IPR025300 -
Vian4g01053 575 SUPERFAMILY Galactose-binding domain-like 260 416 IPR008979 -
Vian4g01053 575 Pfam Glycosyl hydrolases family 35 8 197 IPR031330 -
Vian4g01053 575 Gene3D - 296 432 - -
Vian4g01053 575 Pfam Beta-sandwich domain in beta galactosidase 205 276 IPR041392 -
Vian4g01053 575 FunFam Beta-galactosidase 438 563 - -
Vian4g01053 575 FunFam Beta-galactosidase 2 201 - -
Vian4g01053 575 SUPERFAMILY Galactose-binding domain-like 435 563 IPR008979 -
Vian4g01053 575 Gene3D - 440 565 - -
Vian4g01053 575 SUPERFAMILY (Trans)glycosidases 6 201 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01053 Vian-Chr4 16566220 16570032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01053 6 560 Glycoside Hydrolase AT5G63800 60.862 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01053 - - gmx:100813064 1043.11