Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00959 ATGGCGGCCACCGCGTCCAGAACTCCATTTTCTGCTTGTTCCTCGTACTCGGCCTTCCCCAAACGCATTGTCAGATCCAACATCCCTCTCTCTCACCCAACCCTTACCAAACCCTCTCACGCTCACCCTCTCGCAATCTCATGCTCCCACCCCAAGCCTCCCGCAGCCACACCAACAGCTGTCGTCGTGTCGCCACCGGCCGCCGAGCCCTTCCTCTCGCGTTTCGCGCCATGTGAGCCGCGCAAGGGCGCGGACATCCTCGTGGAGGCGCTGGAGCGGCAGGACGTCACCACGGTCTTCGCGTACCCCGGCGGCGCGTCGATGGAAATCCACCAGGCGCTAACGCGTGCTCCGGCCATTCGCAACGTGCTCCCGCGCCACGAGCAGGGCGGCGTGTTCGCGGCCGAGGGCTACGCGCGGTCGTCTGGGAAACCCGGCGTGTGTATCGCCACCTCCGGTCCTGGCGCCACGAACCTGGTGAGCGGCCTAGCAGACGCGATGATGGACAGCGTACCGGTGGTGGCCATTACCGGGCAGGTCCCGCGGCGGATGATCGGCACTGACGCTTTCCAGGAAACCCCCATCGTGGAAGTTTCCAGATCCATCACCAAACACAACTACCTCATCCTCGACGTCGACGATATTCCGCGGGTCGTCAGCGAGGCCTTCTTCGTCGCCACTTCTGGCCGTCCCGGCCCAGTCCTGATTGACGTTCCCAAAGACGTTCAGCAGCAACTGGCAGTTCCTAATTGGGACCTTCCCGATAAGCTCCCCGGGTACGCCGCCAGGCTGCCCAAGCCCCCCAGCGATGCCCAGTTGGAACAGATTGTCAGACTCATACTGGAGGCCCAGAAGCCCGTTTTGTATGTGGGAGGTGGCTCTTTGAACTCCAGCGCCGAGCTGAAGCGATTTGTGGAACTCACCGGAATTCCTGTTGCCAGCACTTTAATGGGCCTTGGAACTTTCCCCATGGGCCACGAACATTCCCTTCAAATGTTGGGGATGCATGGTACTGTTTATGCCAACTACGCCGTTGATAAAAGTGATTTGTTGCTTGCCTTTGGGGTGAGGTTTGACGACCGTGTCACCGGGAAGCTGGAGGCATTTGCTAGTAGGGCTAAGATTGTTCACATTGATATTGATTCCGCTGAGATTGGGAAGAATAAGCAGCCACACGTATCGGTTTGTGGGGATTTGAAGTTGGCATTACAGGGTATTAATAGGATTTTGGAGGATATAGGGGTGAAGGGTAAGCTAGATCTTGGAGCTTGGAGAGCAGATATTAATATGCAGAAAGAGAAGTTTCCTTTGAGTTATAAGAAGTTTGCTGATGGGATTTCTCCTCAGCACGCAATTGAGGTTCTTGATGAGTTAACAAATGGAGATGCTATTGTTAGCACTGGGGTAGGGCAGCATCAAATGTGGGCTGCACAATTCTACAAGTACAAGAGGCCTAGACAGTGGTTGACTTCAGGGGGTCTTGGAGCTATGGGTTTTGGATTGCCTGCGGCTATTGGTGCTGCTGTAGCGAACCCTGGTGCTTTGGTTGTCGACATTGATGGAGATGGGAGTTTCATAATGAATATTCAGGAGTTGGCGACTATAAGAGTGGAGAATCTCCCTGTTAAGATATTGTTGTTGAATAATCAGCACTTGGGTATGGTGGTTCAGTGGGAGGATCGGTTCTACAAGGCCAACAGAGCACACACGTATCTGGGAGATCCCTCGAGGGAGAATGAGATATTCCCGAACATGCTAAAGTTTGCAGATGCTTGTGGGATACCCGGGGAGCGTGTGACGAAGAAGGAAGAGCTTAGACGGGCAATTCAGAAAATGCTGGACACTCCCGGCCCCTATCTTCTTGAGGTCATAGTGCCTCATCAGGAACACGTGCTGCCGATGATTCCCAGTAATGGATCCTTCAAGGATGTGATTACTGAGGGTGATGGCAGAACAAGGTACTGA 1965 0.5445 MAATASRTPFSACSSYSAFPKRIVRSNIPLSHPTLTKPSHAHPLAISCSHPKPPAATPTAVVVSPPAAEPFLSRFAPCEPRKGADILVEALERQDVTTVFAYPGGASMEIHQALTRAPAIRNVLPRHEQGGVFAAEGYARSSGKPGVCIATSGPGATNLVSGLADAMMDSVPVVAITGQVPRRMIGTDAFQETPIVEVSRSITKHNYLILDVDDIPRVVSEAFFVATSGRPGPVLIDVPKDVQQQLAVPNWDLPDKLPGYAARLPKPPSDAQLEQIVRLILEAQKPVLYVGGGSLNSSAELKRFVELTGIPVASTLMGLGTFPMGHEHSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDLKLALQGINRILEDIGVKGKLDLGAWRADINMQKEKFPLSYKKFADGISPQHAIEVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGALVVDIDGDGSFIMNIQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSRENEIFPNMLKFADACGIPGERVTKKEELRRAIQKMLDTPGPYLLEVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00959 654 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 468 623 IPR011766 GO:0003824|GO:0030976
Vian4g00959 654 CDD TPP_AHAS 446 637 IPR039368 GO:0030976
Vian4g00959 654 FunFam Acetolactate synthase 266 437 - -
Vian4g00959 654 CDD TPP_PYR_POX_like 85 240 - -
Vian4g00959 654 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 82 245 IPR012001 GO:0030976
Vian4g00959 654 ProSitePatterns Thiamine pyrophosphate enzymes signature. 505 524 IPR000399 GO:0000287|GO:0030976
Vian4g00959 654 FunFam Acetolactate synthase, mitochondrial 437 653 - -
Vian4g00959 654 SUPERFAMILY DHS-like NAD/FAD-binding domain 269 436 IPR029035 -
Vian4g00959 654 Gene3D - 438 624 - -
Vian4g00959 654 Pfam Thiamine pyrophosphate enzyme, central domain 274 404 IPR012000 GO:0000287|GO:0030976
Vian4g00959 654 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 80 258 IPR029061 -
Vian4g00959 654 FunFam Acetolactate synthase 76 259 - -
Vian4g00959 654 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 80 643 IPR045229 -
Vian4g00959 654 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 444 645 IPR029061 -
Vian4g00959 654 Gene3D - 71 264 - -
Vian4g00959 654 Gene3D - 273 437 - -
Vian4g00959 654 NCBIfam biosynthetic-type acetolactate synthase large subunit 82 646 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00959 Vian-Chr4 14106705 14108669 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00959 K01652 - gmx:100782250 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00959 4 14106705 14108669 Vian4g00959 4 14106705 14108669 ECH